BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0482100 Os08g0482100|AK065903
         (865 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0482100  LETM1-like domain containing protein               1638   0.0  

>Os08g0482100 LETM1-like domain containing protein
          Length = 865

 Score = 1638 bits (4241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 808/865 (93%), Positives = 808/865 (93%)

Query: 1   MATAVGSQPRAAMCGASTSKIYTLEKVYGFRLVCRSVVDLRSQKFHTRVYKRKSYFRSSA 60
           MATAVGSQPRAAMCGASTSKIYTLEKVYGFRLVCRSVVDLRSQKFHTRVYKRKSYFRSSA
Sbjct: 1   MATAVGSQPRAAMCGASTSKIYTLEKVYGFRLVCRSVVDLRSQKFHTRVYKRKSYFRSSA 60

Query: 61  SECEKIIHSARWLEXXXXXXXXXXXXXXIHLIPLASQDDSSGLSVNGSPQVDSASEMDDI 120
           SECEKIIHSARWLE              IHLIPLASQDDSSGLSVNGSPQVDSASEMDDI
Sbjct: 61  SECEKIIHSARWLEFRRQRVAFQRTRRTIHLIPLASQDDSSGLSVNGSPQVDSASEMDDI 120

Query: 121 RVKLVKALQSEDISTGLVQSIHDAARSIELAFLDHSKSSKNSWFPKEWLGVDNNEWIKPL 180
           RVKLVKALQSEDISTGLVQSIHDAARSIELAFLDHSKSSKNSWFPKEWLGVDNNEWIKPL
Sbjct: 121 RVKLVKALQSEDISTGLVQSIHDAARSIELAFLDHSKSSKNSWFPKEWLGVDNNEWIKPL 180

Query: 181 SYQAAVGSLLQAVIDVSSRGNGRDRDINVFVQXXXXXXXXXXEGAIQNELSKREPTLYQW 240
           SYQAAVGSLLQAVIDVSSRGNGRDRDINVFVQ          EGAIQNELSKREPTLYQW
Sbjct: 181 SYQAAVGSLLQAVIDVSSRGNGRDRDINVFVQRSLSRLLSSLEGAIQNELSKREPTLYQW 240

Query: 241 YSSDQNPLVVRTFVNSFENDPRFNSATAICHERQQMNTSESDLSLLMLGLTCLAAITKLG 300
           YSSDQNPLVVRTFVNSFENDPRFNSATAICHERQQMNTSESDLSLLMLGLTCLAAITKLG
Sbjct: 241 YSSDQNPLVVRTFVNSFENDPRFNSATAICHERQQMNTSESDLSLLMLGLTCLAAITKLG 300

Query: 301 STKVSCQQFFSMVPDIIGRFMDMLLEFVPLSKAYTLTKDIGLQREFLCNFGPRAADPKFS 360
           STKVSCQQFFSMVPDIIGRFMDMLLEFVPLSKAYTLTKDIGLQREFLCNFGPRAADPKFS
Sbjct: 301 STKVSCQQFFSMVPDIIGRFMDMLLEFVPLSKAYTLTKDIGLQREFLCNFGPRAADPKFS 360

Query: 361 SDREVEISFWIDLVQKQLLRALDREKIWSRLTTSESIEVLEKDLAIFGFFIALGRSTQTY 420
           SDREVEISFWIDLVQKQLLRALDREKIWSRLTTSESIEVLEKDLAIFGFFIALGRSTQTY
Sbjct: 361 SDREVEISFWIDLVQKQLLRALDREKIWSRLTTSESIEVLEKDLAIFGFFIALGRSTQTY 420

Query: 421 LSSNHLTNLDDSINDIVRYLIGGSVLYYPQLSSISSYQLYVEVVCEELEWLPFYSGDVPA 480
           LSSNHLTNLDDSINDIVRYLIGGSVLYYPQLSSISSYQLYVEVVCEELEWLPFYSGDVPA
Sbjct: 421 LSSNHLTNLDDSINDIVRYLIGGSVLYYPQLSSISSYQLYVEVVCEELEWLPFYSGDVPA 480

Query: 481 ATIEGREDVHKGEIISRVLNVCSYWMTSFIKYSSWLENPSNVKAARFLSKGHSMLSDCMK 540
           ATIEGREDVHKGEIISRVLNVCSYWMTSFIKYSSWLENPSNVKAARFLSKGHSMLSDCMK
Sbjct: 481 ATIEGREDVHKGEIISRVLNVCSYWMTSFIKYSSWLENPSNVKAARFLSKGHSMLSDCMK 540

Query: 541 ELDLTKYDMPKDQTFPEAKEHLVARTELASFDKSLESVEEALVKLEDLLQELHLSSSNSG 600
           ELDLTKYDMPKDQTFPEAKEHLVARTELASFDKSLESVEEALVKLEDLLQELHLSSSNSG
Sbjct: 541 ELDLTKYDMPKDQTFPEAKEHLVARTELASFDKSLESVEEALVKLEDLLQELHLSSSNSG 600

Query: 601 KEDLRAACSDLEMIRRLKKEAEFLEASFRAKTEFLEADASSRPLSPAVEEGRGKTASNAN 660
           KEDLRAACSDLEMIRRLKKEAEFLEASFRAKTEFLEADASSRPLSPAVEEGRGKTASNAN
Sbjct: 601 KEDLRAACSDLEMIRRLKKEAEFLEASFRAKTEFLEADASSRPLSPAVEEGRGKTASNAN 660

Query: 661 ESSTPQKPANRVENKRRPIWDLFGRPSGRRVQLVQQTSDQNVSVANVDNKDTQSNDILRF 720
           ESSTPQKPANRVENKRRPIWDLFGRPSGRRVQLVQQTSDQNVSVANVDNKDTQSNDILRF
Sbjct: 661 ESSTPQKPANRVENKRRPIWDLFGRPSGRRVQLVQQTSDQNVSVANVDNKDTQSNDILRF 720

Query: 721 EQLRRELIELEKRVQKSADNAQKEETYVANETLDXXXXXXXXXXXXXXXXKKENXXXXXX 780
           EQLRRELIELEKRVQKSADNAQKEETYVANETLD                KKEN      
Sbjct: 721 EQLRRELIELEKRVQKSADNAQKEETYVANETLDSSVSSSPVSMPSGPASKKENVITKSV 780

Query: 781 XXXXXXXXXXXQGTQLLAIDTGAAMGLLRRALIGDELTHKEKQALQRTLTDLASVVPIGI 840
                      QGTQLLAIDTGAAMGLLRRALIGDELTHKEKQALQRTLTDLASVVPIGI
Sbjct: 781 EKVKETTTTVVQGTQLLAIDTGAAMGLLRRALIGDELTHKEKQALQRTLTDLASVVPIGI 840

Query: 841 LMLLPVTAVGHAAILAFIQRYVPSM 865
           LMLLPVTAVGHAAILAFIQRYVPSM
Sbjct: 841 LMLLPVTAVGHAAILAFIQRYVPSM 865



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,669,054
Number of extensions: 934662
Number of successful extensions: 2846
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2845
Number of HSP's successfully gapped: 1
Length of query: 865
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 756
Effective length of database: 11,344,475
Effective search space: 8576423100
Effective search space used: 8576423100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)