Os08g0482100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : LETM1-like domain containing protein.
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Os08g0482100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : LETM1-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.66 | 0.296 | 11.5 | 0.455 | 1.13 | -1.33 | 0.408 | 2.54 | 0.0454 | 7.11 | 19.76 | 336 | -- | -- |
| 43.33 | 0.307 | 11.6 | 0.0416 | 1.13 | -1.32 | -0.204 | -- | -0.059 | 6.84 | 17.63 | 401 | -- | -- |
| 40.03 | 0.295 | 11.6 | 0.408 | 1.13 | -1.32 | -- | 2.24 | 0.0295 | 7.05 | 19.67 | 342 | -- | -- |
| 43.21 | 0.306 | 11.6 | 0.0185 | 1.16 | -1.35 | -- | -- | -0.0801 | 6.63 | 16.3 | 457 | -- | -- |
| 81.25 | 0.42 | 11.6 | 0.631 | -- | -2.21 | -- | 4.03 | 0.101 | -- | 24.2 | 407 | -- | -- |
| 67.24 | 0.384 | 11.6 | -0.313 | 1.56 | -- | 0.0578 | -- | -0.304 | 6.56 | -- | -- | -- | -- |
| 67.25 | 0.384 | 11.6 | -0.312 | 1.56 | -- | -- | -- | -0.305 | 6.55 | -- | -- | -- | -- |
| 89.08 | 0.44 | 11.6 | 0.0587 | -- | -1.9 | -- | -- | -0.0824 | -- | 24.2 | 414 | -- | -- |
| 43.2 | 0.306 | 11.6 | -- | 1.16 | -1.34 | -- | -- | -0.0867 | 6.64 | 16.32 | 457 | -- | -- |
| 194.32 | 0.651 | 11.7 | -0.274 | -- | -- | -- | -- | -0.272 | -- | -- | -- | -- | -- |
| 69.81 | 0.391 | 11.6 | -- | 1.56 | -- | -- | -- | -0.27 | 6.56 | -- | -- | -- | -- |
| 89.16 | 0.44 | 11.6 | -- | -- | -1.9 | -- | -- | -0.0879 | -- | 24.2 | 414 | -- | -- |
| 196.3 | 0.654 | 11.7 | -- | -- | -- | -- | -- | -0.242 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.26 | temperature | 20 | 720 | > th | dose dependent | sin | 5 | NA |
| 3 | 36.79 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 7 | 36.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 8 | 36.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 11 | 36.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 18 | 37.32 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 21 |
| 27 | 37.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 55 | 38.01 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 73 | 38.21 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 101 | 38.58 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 213 | 39.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 220 | 39.93 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 235 | 39.99 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 240 | 40.04 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 260 | 40.29 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 268 | 40.34 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 3 |
| 271 | 40.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 16 |
| 350 | 40.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 10 |
| 392 | 40.83 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 394 | 40.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 8 |
| 429 | 40.94 | temperature | 20 | 4320 | > th | dose dependent | sin | 1 | NA |
| 494 | 41.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 512 | 41.09 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |