BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0454400 Os08g0454400|Os08g0454400
         (204 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0454400  Conserved hypothetical protein                      321   2e-88

>Os08g0454400 Conserved hypothetical protein
          Length = 204

 Score =  321 bits (822), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 166/204 (81%), Positives = 166/204 (81%)

Query: 1   MPPGAGQMWLDVAGRQRLIPERRRGEIRQTRKGEIQRPLQPPRQAVHTGQGRFLHAIRQV 60
           MPPGAGQMWLDVAGRQRLIPERRRGEIRQTRKGEIQRPLQPPRQAVHTGQGRFLHAIRQV
Sbjct: 1   MPPGAGQMWLDVAGRQRLIPERRRGEIRQTRKGEIQRPLQPPRQAVHTGQGRFLHAIRQV 60

Query: 61  HXXXXXXXXXXXXXXXXXXXXXXPLQHRIRLLQGLAASSKGKLGDAXXXXXXXXXXXXXX 120
           H                      PLQHRIRLLQGLAASSKGKLGDA              
Sbjct: 61  HRQAEQGAEARRERRRDRGCQIRPLQHRIRLLQGLAASSKGKLGDARSRSGETGSGSSSI 120

Query: 121 XXQPPPRASRLLHPQAAAATVSTSSCGHYVSMPPPSCIRWVLIDYGFHPWPHGPTAMSLD 180
             QPPPRASRLLHPQAAAATVSTSSCGHYVSMPPPSCIRWVLIDYGFHPWPHGPTAMSLD
Sbjct: 121 TEQPPPRASRLLHPQAAAATVSTSSCGHYVSMPPPSCIRWVLIDYGFHPWPHGPTAMSLD 180

Query: 181 STIGRIDQAQFQQSFSFVLLCIFV 204
           STIGRIDQAQFQQSFSFVLLCIFV
Sbjct: 181 STIGRIDQAQFQQSFSFVLLCIFV 204



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.138    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,276,511
Number of extensions: 282650
Number of successful extensions: 1184
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1182
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 153 (63.5 bits)