BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0446800 Os08g0446800|J100040N04
         (180 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0446800  Conserved hypothetical protein                      166   1e-41

>Os08g0446800 Conserved hypothetical protein
          Length = 180

 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 88/147 (59%), Positives = 88/147 (59%)

Query: 34  WHSPVPYXXXXXXXXXXXXXXXXXXXXCSYWKLSGYLEXXXXXXXXXXXXXXXXXXXXXX 93
           WHSPVPY                    CSYWKLSGYLE                      
Sbjct: 34  WHSPVPYLFGGLAAMLGLIAFALLILACSYWKLSGYLEGGAGGRGGNDDGGAPADGAKPA 93

Query: 94  XSELPPPIWEEKILVIMAGDVKPTYLATPMXXXXXXXXXXXXXXXXQADDEKKKVQEVAM 153
            SELPPPIWEEKILVIMAGDVKPTYLATPM                QADDEKKKVQEVAM
Sbjct: 94  ASELPPPIWEEKILVIMAGDVKPTYLATPMSSRASSFGDRSSSNGDQADDEKKKVQEVAM 153

Query: 154 GSLVKDGENGEHSESQRDRDEHHIPEV 180
           GSLVKDGENGEHSESQRDRDEHHIPEV
Sbjct: 154 GSLVKDGENGEHSESQRDRDEHHIPEV 180



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.132    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,795,063
Number of extensions: 92066
Number of successful extensions: 179
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 86
Effective length of database: 12,127,685
Effective search space: 1042980910
Effective search space used: 1042980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 153 (63.5 bits)