BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0430000 Os08g0430000|AK120950
(1463 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0430000 Conserved hypothetical protein 2750 0.0
>Os08g0430000 Conserved hypothetical protein
Length = 1463
Score = 2750 bits (7129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1356/1463 (92%), Positives = 1356/1463 (92%)
Query: 1 MRKAGGAKEDFKGSIGPEGAVDVKQSLVSLGATGRRPGFMIRLCTCTGRPSSLRNLNNSG 60
MRKAGGAKEDFKGSIGPEGAVDVKQSLVSLGATGRRPGFMIRLCTCTGRPSSLRNLNNSG
Sbjct: 1 MRKAGGAKEDFKGSIGPEGAVDVKQSLVSLGATGRRPGFMIRLCTCTGRPSSLRNLNNSG 60
Query: 61 VSMTCKGCGGESTTDRAGPSCSSKLNTMGLELPRPIDPEVRWKTVNXXXXXXXXXXTSFS 120
VSMTCKGCGGESTTDRAGPSCSSKLNTMGLELPRPIDPEVRWKTVN TSFS
Sbjct: 61 VSMTCKGCGGESTTDRAGPSCSSKLNTMGLELPRPIDPEVRWKTVNRRQRAARRARTSFS 120
Query: 121 GEDRIRDEIRSFYACGNATNQELAQDDAPVSESEKFGVSILGRRFSDPVGNVPIKKRRFL 180
GEDRIRDEIRSFYACGNATNQELAQDDAPVSESEKFGVSILGRRFSDPVGNVPIKKRRFL
Sbjct: 121 GEDRIRDEIRSFYACGNATNQELAQDDAPVSESEKFGVSILGRRFSDPVGNVPIKKRRFL 180
Query: 181 MDCXXXXXXXXXXVDPYEKLLSRSCGGISSHGKHHKVKTPRLDYMEETKEHFGVDDFSGI 240
MDC VDPYEKLLSRSCGGISSHGKHHKVKTPRLDYMEETKEHFGVDDFSGI
Sbjct: 181 MDCSPSPPPTPLLVDPYEKLLSRSCGGISSHGKHHKVKTPRLDYMEETKEHFGVDDFSGI 240
Query: 241 SILAAAACTSELDDDTLNVECSKSAHCVERKPENITGSSELNFLNNIKEDMLNSLDASNC 300
SILAAAACTSELDDDTLNVECSKSAHCVERKPENITGSSELNFLNNIKEDMLNSLDASNC
Sbjct: 241 SILAAAACTSELDDDTLNVECSKSAHCVERKPENITGSSELNFLNNIKEDMLNSLDASNC 300
Query: 301 KSDPLLESSESVPDTKPVVATRLNCENLVESTHTQKDCSASFSALXXXXXXXXXXXXXXX 360
KSDPLLESSESVPDTKPVVATRLNCENLVESTHTQKDCSASFSAL
Sbjct: 301 KSDPLLESSESVPDTKPVVATRLNCENLVESTHTQKDCSASFSALSSANKADDSSTASDT 360
Query: 361 XXXGVTMSINASNPDKSVGGLQDAVVETKHSNGTRDSRLHWDLNVAMEAWDTDCGGXXXX 420
GVTMSINASNPDKSVGGLQDAVVETKHSNGTRDSRLHWDLNVAMEAWDTDCGG
Sbjct: 361 KSSGVTMSINASNPDKSVGGLQDAVVETKHSNGTRDSRLHWDLNVAMEAWDTDCGGDDVP 420
Query: 421 XXXXXXXXXFAISSCSDAENVLNKLQVCQAPFDSTIAGNIPDLSEDKTPVIDAPKDASTK 480
FAISSCSDAENVLNKLQVCQAPFDSTIAGNIPDLSEDKTPVIDAPKDASTK
Sbjct: 421 DAADPDPVAFAISSCSDAENVLNKLQVCQAPFDSTIAGNIPDLSEDKTPVIDAPKDASTK 480
Query: 481 SESDFAGDGSSQPLCSLSPQNVPVLESRPLECDGLSAGTKELPDNNDISKVKSQLGSDPD 540
SESDFAGDGSSQPLCSLSPQNVPVLESRPLECDGLSAGTKELPDNNDISKVKSQLGSDPD
Sbjct: 481 SESDFAGDGSSQPLCSLSPQNVPVLESRPLECDGLSAGTKELPDNNDISKVKSQLGSDPD 540
Query: 541 CSSLPPMTERFALTVIEEKLDVSHASALDCVGLSQMVSTDGCDGINSVQMSELGSRVKPF 600
CSSLPPMTERFALTVIEEKLDVSHASALDCVGLSQMVSTDGCDGINSVQMSELGSRVKPF
Sbjct: 541 CSSLPPMTERFALTVIEEKLDVSHASALDCVGLSQMVSTDGCDGINSVQMSELGSRVKPF 600
Query: 601 TSRLVSEESTNLATVTVFNKSSTDLGWSNDKLGQTSQQSISELKNQDLLDVDSGTSKIGQ 660
TSRLVSEESTNLATVTVFNKSSTDLGWSNDKLGQTSQQSISELKNQDLLDVDSGTSKIGQ
Sbjct: 601 TSRLVSEESTNLATVTVFNKSSTDLGWSNDKLGQTSQQSISELKNQDLLDVDSGTSKIGQ 660
Query: 661 SGHDKVEHVTNELSISKKAAXXXXXXXXXXXHMNDNPGSSDRGMSHAHEEEGADATISNN 720
SGHDKVEHVTNELSISKKAA HMNDNPGSSDRGMSHAHEEEGADATISNN
Sbjct: 661 SGHDKVEHVTNELSISKKAADVDDDLDLSDSHMNDNPGSSDRGMSHAHEEEGADATISNN 720
Query: 721 LTCTDSSNALICRIDGACVAPPINSECIKPSTTDMDSIADSQSAEQSYLGKVLSNNFMEH 780
LTCTDSSNALICRIDGACVAPPINSECIKPSTTDMDSIADSQSAEQSYLGKVLSNNFMEH
Sbjct: 721 LTCTDSSNALICRIDGACVAPPINSECIKPSTTDMDSIADSQSAEQSYLGKVLSNNFMEH 780
Query: 781 CNETEAPHIIKDLAGTGNIVAEEDDSQYEDGELRESGEYWGDDCYEEVKPANYQVLDCKS 840
CNETEAPHIIKDLAGTGNIVAEEDDSQYEDGELRESGEYWGDDCYEEVKPANYQVLDCKS
Sbjct: 781 CNETEAPHIIKDLAGTGNIVAEEDDSQYEDGELRESGEYWGDDCYEEVKPANYQVLDCKS 840
Query: 841 DAPGISPFPLGSMSKNTGDRVANFNGKHSRNGGGDVSPAALKCSWSTTCIDDGSGTMCAG 900
DAPGISPFPLGSMSKNTGDRVANFNGKHSRNGGGDVSPAALKCSWSTTCIDDGSGTMCAG
Sbjct: 841 DAPGISPFPLGSMSKNTGDRVANFNGKHSRNGGGDVSPAALKCSWSTTCIDDGSGTMCAG 900
Query: 901 STGEKALSVHLRVNGETRMYEMNPGHVIAGSSATVNQSERVNDGLGDDLSSLRTKPTGWD 960
STGEKALSVHLRVNGETRMYEMNPGHVIAGSSATVNQSERVNDGLGDDLSSLRTKPTGWD
Sbjct: 901 STGEKALSVHLRVNGETRMYEMNPGHVIAGSSATVNQSERVNDGLGDDLSSLRTKPTGWD 960
Query: 961 MLPEDQRHSQHDSRDTVDSSNRCVLSTSDTAGGGESLRHMELSSGDMQPRADRPRSFDRA 1020
MLPEDQRHSQHDSRDTVDSSNRCVLSTSDTAGGGESLRHMELSSGDMQPRADRPRSFDRA
Sbjct: 961 MLPEDQRHSQHDSRDTVDSSNRCVLSTSDTAGGGESLRHMELSSGDMQPRADRPRSFDRA 1020
Query: 1021 HINELCRSDDGYGSGSKAERTIDIRKSHERGGASRHIQGSSRVEQWVENSNNSRTTWRKS 1080
HINELCRSDDGYGSGSKAERTIDIRKSHERGGASRHIQGSSRVEQWVENSNNSRTTWRKS
Sbjct: 1021 HINELCRSDDGYGSGSKAERTIDIRKSHERGGASRHIQGSSRVEQWVENSNNSRTTWRKS 1080
Query: 1081 PDYYNYGLPGPRNAAEAAVAKMQSNGFVVAPDGTLVKAVDTANASKMARRVRNNTLSSSY 1140
PDYYNYGLPGPRNAAEAAVAKMQSNGFVVAPDGTLVKAVDTANASKMARRVRNNTLSSSY
Sbjct: 1081 PDYYNYGLPGPRNAAEAAVAKMQSNGFVVAPDGTLVKAVDTANASKMARRVRNNTLSSSY 1140
Query: 1141 RPLSGRGSPIDRDGGCGVSRGPAHAREASPERRFSTSGNRSVRYGPDMDKDHANVNMSSA 1200
RPLSGRGSPIDRDGGCGVSRGPAHAREASPERRFSTSGNRSVRYGPDMDKDHANVNMSSA
Sbjct: 1141 RPLSGRGSPIDRDGGCGVSRGPAHAREASPERRFSTSGNRSVRYGPDMDKDHANVNMSSA 1200
Query: 1201 RCSLASRQRRFPQHRASLNLXXXXXXXXXXXXXXXXXXWTSPRNRREVMVNGXXXXXXXX 1260
RCSLASRQRRFPQHRASLNL WTSPRNRREVMVNG
Sbjct: 1201 RCSLASRQRRFPQHRASLNLSRAHSRSPSGSRSRSPHAWTSPRNRREVMVNGSSSLWRHS 1260
Query: 1261 XXXXPPNYMTEVRMGRMTSPSRQPGFGDRVMRYSPSSRDRAYSQHASTWADGRNCSTVDL 1320
PPNYMTEVRMGRMTSPSRQPGFGDRVMRYSPSSRDRAYSQHASTWADGRNCSTVDL
Sbjct: 1261 RSRSPPNYMTEVRMGRMTSPSRQPGFGDRVMRYSPSSRDRAYSQHASTWADGRNCSTVDL 1320
Query: 1321 PDHKKRYSRRSPPLRVTSRNDRFDVDSHGRPRSGELYRPTQGRLPYGFEXXXXXXXXXXX 1380
PDHKKRYSRRSPPLRVTSRNDRFDVDSHGRPRSGELYRPTQGRLPYGFE
Sbjct: 1321 PDHKKRYSRRSPPLRVTSRNDRFDVDSHGRPRSGELYRPTQGRLPYGFERGRGNRHDGNG 1380
Query: 1381 XXXXEYADRYETHSAKPYDRNGATKQFRNHTGDKLRPCISAPRSPEPQRRGSPRRFDRGF 1440
EYADRYETHSAKPYDRNGATKQFRNHTGDKLRPCISAPRSPEPQRRGSPRRFDRGF
Sbjct: 1381 DDQREYADRYETHSAKPYDRNGATKQFRNHTGDKLRPCISAPRSPEPQRRGSPRRFDRGF 1440
Query: 1441 GRQLGVDLPRGTKEDNKNPFRYD 1463
GRQLGVDLPRGTKEDNKNPFRYD
Sbjct: 1441 GRQLGVDLPRGTKEDNKNPFRYD 1463
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.129 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 51,663,558
Number of extensions: 2320653
Number of successful extensions: 4672
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4670
Number of HSP's successfully gapped: 1
Length of query: 1463
Length of database: 17,035,801
Length adjustment: 113
Effective length of query: 1350
Effective length of database: 11,135,619
Effective search space: 15033085650
Effective search space used: 15033085650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 163 (67.4 bits)