BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0427500 Os08g0427500|AK102608
         (880 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0427500  DNA repair protein Rad4 family protein             1465   0.0  

>Os08g0427500 DNA repair protein Rad4 family protein
          Length = 880

 Score = 1465 bits (3792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 718/832 (86%), Positives = 718/832 (86%)

Query: 49  EKGKSPAKVEMESALEDKSKNVKVHAEGYDDAGMTRFGRDGSEKNSLEEEDPDAADMDWE 108
           EKGKSPAKVEMESALEDKSKNVKVHAEGYDDAGMTRFGRDGSEKNSLEEEDPDAADMDWE
Sbjct: 49  EKGKSPAKVEMESALEDKSKNVKVHAEGYDDAGMTRFGRDGSEKNSLEEEDPDAADMDWE 108

Query: 109 EGIVFAAEHDECYSHELGETVTVEFTDLPSSTEKKTARRLTAEEKELAELVHRVHLLCLL 168
           EGIVFAAEHDECYSHELGETVTVEFTDLPSSTEKKTARRLTAEEKELAELVHRVHLLCLL
Sbjct: 109 EGIVFAAEHDECYSHELGETVTVEFTDLPSSTEKKTARRLTAEEKELAELVHRVHLLCLL 168

Query: 169 ARGRVIDKACNDPLIQASILSVLPQHVLRNSVDTPILKANELRSLVSWFHNTFSVIAQSD 228
           ARGRVIDKACNDPLIQASILSVLPQHVLRNSVDTPILKANELRSLVSWFHNTFSVIAQSD
Sbjct: 169 ARGRVIDKACNDPLIQASILSVLPQHVLRNSVDTPILKANELRSLVSWFHNTFSVIAQSD 228

Query: 229 DKGSFKSNLAFALQSYVGTAEEVCALSVALFRALNLTARFVANLDVAGLKPDTKSMGTSN 288
           DKGSFKSNLAFALQSYVGTAEEVCALSVALFRALNLTARFVANLDVAGLKPDTKSMGTSN
Sbjct: 229 DKGSFKSNLAFALQSYVGTAEEVCALSVALFRALNLTARFVANLDVAGLKPDTKSMGTSN 288

Query: 289 QDEPRLCTKALPSSSFVAGHNEYNNLSPVLSQNNTEGSINTTPKQVKVQGCRXXXXXXXX 348
           QDEPRLCTKALPSSSFVAGHNEYNNLSPVLSQNNTEGSINTTPKQVKVQGCR        
Sbjct: 289 QDEPRLCTKALPSSSFVAGHNEYNNLSPVLSQNNTEGSINTTPKQVKVQGCRKSLSKKLS 348

Query: 349 XXXANQRDXXXXXXXXXXXXXXXXXXXXNAEVPRRKGDLEFELQLEMALLASAAKSQDNK 408
              ANQRD                    NAEVPRRKGDLEFELQLEMALLASAAKSQDNK
Sbjct: 349 KCKANQRDSSASLSKDSSSSSQYPSTSSNAEVPRRKGDLEFELQLEMALLASAAKSQDNK 408

Query: 409 LATQLNQXXXXXXXXXXXXXXXRKXXXXXXXXXXXXXXXXXPLFWAEVFCGGEASSGRWV 468
           LATQLNQ               RK                 PLFWAEVFCGGEASSGRWV
Sbjct: 409 LATQLNQSTDSLLSSTPPLKKLRKSEEASSNSSVVWSRNRAPLFWAEVFCGGEASSGRWV 468

Query: 469 HVDVANDIIDGEQKVEAASAVCRKPLRYVVAFAGNGAKDVTRRYCLQWHRIVQGRVNPEW 528
           HVDVANDIIDGEQKVEAASAVCRKPLRYVVAFAGNGAKDVTRRYCLQWHRIVQGRVNPEW
Sbjct: 469 HVDVANDIIDGEQKVEAASAVCRKPLRYVVAFAGNGAKDVTRRYCLQWHRIVQGRVNPEW 528

Query: 529 WKSVLAPLERLELAATNNTEEMELQTRALTEPLPTNQQAYKDHHLYALEKWLHKNQVLHP 588
           WKSVLAPLERLELAATNNTEEMELQTRALTEPLPTNQQAYKDHHLYALEKWLHKNQVLHP
Sbjct: 529 WKSVLAPLERLELAATNNTEEMELQTRALTEPLPTNQQAYKDHHLYALEKWLHKNQVLHP 588

Query: 589 KGPVLGFCKGNPVYPRSCVQTLQSRHGWLREGLQVRENELPAKVVTRPKRTFXXXXXXXX 648
           KGPVLGFCKGNPVYPRSCVQTLQSRHGWLREGLQVRENELPAKVVTRPKRTF        
Sbjct: 589 KGPVLGFCKGNPVYPRSCVQTLQSRHGWLREGLQVRENELPAKVVTRPKRTFNSQSIQSN 648

Query: 649 XXXXEDGLKPTMELYGKWQLEPLQLPHAVNGIVPKNERGQVDVWSEKCLPPGTVHLRLPR 708
               EDGLKPTMELYGKWQLEPLQLPHAVNGIVPKNERGQVDVWSEKCLPPGTVHLRLPR
Sbjct: 649 SNSNEDGLKPTMELYGKWQLEPLQLPHAVNGIVPKNERGQVDVWSEKCLPPGTVHLRLPR 708

Query: 709 IFQVAKRLGIDFAPAMVGFDYRNTRCLPVFDGIVVCSEFKNTILXXXXXXXXXXXXXXXX 768
           IFQVAKRLGIDFAPAMVGFDYRNTRCLPVFDGIVVCSEFKNTIL                
Sbjct: 709 IFQVAKRLGIDFAPAMVGFDYRNTRCLPVFDGIVVCSEFKNTILEAYAEQEERRQAEERK 768

Query: 769 XXXXXXLIRWYQLLCSVVTTQRLKDSYKAPSSEHGPEGPSQDVSQQXXXXXXXXXXXXXX 828
                 LIRWYQLLCSVVTTQRLKDSYKAPSSEHGPEGPSQDVSQQ              
Sbjct: 769 QEEAQALIRWYQLLCSVVTTQRLKDSYKAPSSEHGPEGPSQDVSQQKGTRKSRSSETKTR 828

Query: 829 XXXLQADRPFDSPFPVHDHEHEYPEEDQSFDEETFVRTKRCPCGFSIQVEEL 880
              LQADRPFDSPFPVHDHEHEYPEEDQSFDEETFVRTKRCPCGFSIQVEEL
Sbjct: 829 SSRLQADRPFDSPFPVHDHEHEYPEEDQSFDEETFVRTKRCPCGFSIQVEEL 880



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,393,597
Number of extensions: 994325
Number of successful extensions: 2160
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2155
Number of HSP's successfully gapped: 1
Length of query: 880
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 770
Effective length of database: 11,292,261
Effective search space: 8695040970
Effective search space used: 8695040970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)