Os08g0427500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA repair protein Rad4 family protein.
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Os08g0427500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA repair protein Rad4 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.12 | 0.336 | 10.2 | -1.62 | 1.6 | 0.521 | 0.101 | -0.353 | -0.455 | 6.91 | 21.12 | 1505 | -- | -- |
| 51.24 | 0.333 | 10.2 | -1.52 | 1.6 | 0.508 | 0.103 | -- | -0.425 | 6.92 | 20.8 | 1470 | -- | -- |
| 51.13 | 0.333 | 10.2 | -1.63 | 1.61 | 0.521 | -- | -0.383 | -0.456 | 6.9 | 21.42 | 1532 | -- | -- |
| 51.26 | 0.333 | 10.2 | -1.52 | 1.59 | 0.505 | -- | -- | -0.424 | 6.93 | 20.83 | 1460 | -- | -- |
| 185.61 | 0.635 | 10.2 | -1.42 | -- | 0.642 | -- | 0.429 | -0.373 | -- | 17 | 2829 | -- | -- |
| 59.73 | 0.362 | 10.1 | -1.33 | 1.61 | -- | 0.121 | -- | -0.305 | 6.86 | -- | -- | -- | -- |
| 59.77 | 0.362 | 10.1 | -1.33 | 1.61 | -- | -- | -- | -0.305 | 6.86 | -- | -- | -- | -- |
| 183.89 | 0.632 | 10.2 | -1.51 | -- | 0.506 | -- | -- | -0.4 | -- | 21.8 | 1371 | -- | -- |
| 104.94 | 0.48 | 10.1 | -- | 1.63 | 0.343 | -- | -- | -0.149 | 6.77 | 28.48 | 1543 | -- | -- |
| 195.35 | 0.653 | 10.2 | -1.29 | -- | -- | -- | -- | -0.274 | -- | -- | -- | -- | -- |
| 106.25 | 0.482 | 10.1 | -- | 1.59 | -- | -- | -- | -0.157 | 6.91 | -- | -- | -- | -- |
| 209.55 | 0.674 | 10.1 | -- | -- | -1.13 | -- | -- | 0.0292 | -- | 18.1 | 461 | -- | -- |
| 239.46 | 0.722 | 10.1 | -- | -- | -- | -- | -- | -0.131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 11 |
| 4 | 48.82 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 11 | 49.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 13 |
| 16 | 49.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 36 | 49.79 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 5 |
| 42 | 49.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 67 | 50.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 77 | 50.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 78 | 50.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 4 |
| 94 | 50.33 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 96 | 50.33 | temperature | 10 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 103 | 50.36 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 107 | 50.38 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 12 |
| 109 | 50.41 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 111 | 50.41 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 137 | 50.55 | temperature | 15 | 10 | > th | dose dependent | sin | 22 | NA |
| 166 | 50.62 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 178 | 50.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 5 |
| 184 | 50.67 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 13 |
| 203 | 50.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 222 | 50.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 6 |
| 227 | 50.79 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 14 |
| 253 | 50.86 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 265 | 50.88 | temperature | 30 | 10 | < th | dose dependent | sin | 22 | NA |
| 310 | 50.94 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 312 | 50.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 19 |
| 336 | 50.98 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 372 | 51.01 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 383 | 51.02 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 384 | 51.02 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 400 | 51.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 422 | 51.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 16 |
| 457 | 51.07 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 514 | 51.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 18 |
| 728 | 51.17 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 782 | 51.20 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 5 |
| 787 | 51.20 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 810 | 51.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 875 | 51.23 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 883 | 51.23 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 13 |
| 893 | 51.24 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 3 |
| 963 | 51.25 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 970 | 51.26 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 1 |