BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0422000 Os08g0422000|AK067163
(614 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0422000 Conserved hypothetical protein 1030 0.0
>Os08g0422000 Conserved hypothetical protein
Length = 614
Score = 1030 bits (2662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/563 (91%), Positives = 513/563 (91%)
Query: 52 VVCAMXXXXXXXXXXXXXSRTQMIMDKISXXXXXXXXXXXXXXNALKRLDQIWSSICEAQ 111
VVCAM SRTQMIMDKIS NALKRLDQIWSSICEAQ
Sbjct: 52 VVCAMAAGEAGPGPGPAPSRTQMIMDKISSGEEVGGAGGAYSYNALKRLDQIWSSICEAQ 111
Query: 112 SDSKVPEVVTRVQGPLVDYDLGDGSEIFDVLVCGGTLGIFVATALSYKGLRVGIIERNII 171
SDSKVPEVVTRVQGPLVDYDLGDGSEIFDVLVCGGTLGIFVATALSYKGLRVGIIERNII
Sbjct: 112 SDSKVPEVVTRVQGPLVDYDLGDGSEIFDVLVCGGTLGIFVATALSYKGLRVGIIERNII 171
Query: 172 KGREQEWNISRKELMELVEVGXXXXXXXXXXXXXDFNPTRCAFESKGEIWVENILNLGIS 231
KGREQEWNISRKELMELVEVG DFNPTRCAFESKGEIWVENILNLGIS
Sbjct: 172 KGREQEWNISRKELMELVEVGILSEEEIEQIISSDFNPTRCAFESKGEIWVENILNLGIS 231
Query: 232 PAKLVEIMKERFVSSGGAIFEGKSLSSISVHDDFAVLNLSDGGSLPCRLVIDAMGNFSPI 291
PAKLVEIMKERFVSSGGAIFEGKSLSSISVHDDFAVLNLSDGGSLPCRLVIDAMGNFSPI
Sbjct: 232 PAKLVEIMKERFVSSGGAIFEGKSLSSISVHDDFAVLNLSDGGSLPCRLVIDAMGNFSPI 291
Query: 292 VRQIRSGRKPDGVCLVVGTCARGFDRNTTXXXXXXXXXXKRAGNSGVQLFWEGFPAGSGP 351
VRQIRSGRKPDGVCLVVGTCARGFDRNTT KRAGNSGVQLFWEGFPAGSGP
Sbjct: 292 VRQIRSGRKPDGVCLVVGTCARGFDRNTTSDIIFSSSSIKRAGNSGVQLFWEGFPAGSGP 351
Query: 352 TDRTTYMFTYVDPHSGGPKLEELLETFWDLMPAYEDVVLENLDIMRVIFGIFPTYRNSPL 411
TDRTTYMFTYVDPHSGGPKLEELLETFWDLMPAYEDVVLENLDIMRVIFGIFPTYRNSPL
Sbjct: 352 TDRTTYMFTYVDPHSGGPKLEELLETFWDLMPAYEDVVLENLDIMRVIFGIFPTYRNSPL 411
Query: 412 PAAFDRVLQVGDASGIQSPVSFGGFGSLTRHLGRLSNGIYEAVSGDLLDARSLQLLNPYM 471
PAAFDRVLQVGDASGIQSPVSFGGFGSLTRHLGRLSNGIYEAVSGDLLDARSLQLLNPYM
Sbjct: 412 PAAFDRVLQVGDASGIQSPVSFGGFGSLTRHLGRLSNGIYEAVSGDLLDARSLQLLNPYM 471
Query: 472 PNLSASWLFQRAMSARPQIDVSPTFINELLFANFESMQKLGDSVLRPFLQDVIQFGPLVK 531
PNLSASWLFQRAMSARPQIDVSPTFINELLFANFESMQKLGDSVLRPFLQDVIQFGPLVK
Sbjct: 472 PNLSASWLFQRAMSARPQIDVSPTFINELLFANFESMQKLGDSVLRPFLQDVIQFGPLVK 531
Query: 532 TLGLVMITRPQILPSIFKQAGPGVILNWSGHFVMLGYYTFLSTFIDPILRPWVESLPLRN 591
TLGLVMITRPQILPSIFKQAGPGVILNWSGHFVMLGYYTFLSTFIDPILRPWVESLPLRN
Sbjct: 532 TLGLVMITRPQILPSIFKQAGPGVILNWSGHFVMLGYYTFLSTFIDPILRPWVESLPLRN 591
Query: 592 KYQWKRYLEAWKYGAGLDYRQGE 614
KYQWKRYLEAWKYGAGLDYRQGE
Sbjct: 592 KYQWKRYLEAWKYGAGLDYRQGE 614
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.140 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,443,275
Number of extensions: 776467
Number of successful extensions: 1412
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1412
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 507
Effective length of database: 11,448,903
Effective search space: 5804593821
Effective search space used: 5804593821
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)