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Os08g0422000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0179) R2 : 0.576
β1 : -1.2 (0.0656) R2dD : 0.322 R2D : 0.254
β2 : 0.785 (0.0456) R2dC : 0.276 R2C : 0.243
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.258 (0.0383) R2dN8 : 0.0565 R2N8 : -0.00754
σ : 0.337
deviance : 51.75
__
_____
C
peak time of C : 4.04
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.23 0.316 11 -1.11 0.804 -0.383 -0.17 2.23 -0.329 4.27 2.456 1820 -- --
50.24 0.33 11.1 -1.07 0.812 -0.361 -0.0845 -- -0.34 4.26 7.7 4879 -- --
45.26 0.313 11 -1.1 0.802 -0.393 -- 2.16 -0.331 4.29 2.3 1846 -- --
50.25 0.33 11.1 -1.08 0.81 -0.358 -- -- -0.336 4.24 16.75 4875 -- --
68.96 0.389 11.1 -1.36 -- 0.714 -- -0.121 -0.227 -- 3.581 2301 -- --
51.71 0.337 11.1 -1.2 0.785 -- -0.122 -- -0.258 4.01 -- -- -- --
51.75 0.337 11.1 -1.2 0.785 -- -- -- -0.258 4.04 -- -- -- --
67.76 0.385 11.1 -1.39 -- 0.96 -- -- -0.25 -- 17.38 9689 -- --
55.39 0.347 11 -- 0.794 -1.26 -- -- 0.0485 4.01 27.04 47520 -- --
85.34 0.432 11.1 -1.17 -- -- -- -- -0.237 -- -- -- -- --
89.58 0.443 11 -- 0.762 -- -- -- -0.124 4.06 -- -- -- --
88.08 0.437 11 -- -- -1.26 -- -- 0.056 -- 28.45 47124 -- --
121.21 0.514 11 -- -- -- -- -- -0.107 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.72 wind 7 14400 > th dose dependent rect. 22 15
2 41.79 wind 7 14400 > th dose dependent rect. 23 13
7 41.93 wind 7 14400 > th dose dependent rect. 4 7
8 42.00 wind 7 14400 < th dose independent rect. 23 13
10 42.06 wind 7 14400 > th dose dependent rect. 2 10
13 42.09 wind 7 14400 > th dose independent rect. 23 13
49 42.67 radiation 40 1440 < th dose independent rect. 7 2
63 42.94 radiation 40 1440 < th dose independent rect. 20 13
72 42.98 radiation 40 1440 < th dose independent rect. 22 11
73 43.00 wind 9 43200 > th dose independent rect. 18 1
77 43.03 radiation 40 1440 < th dose independent rect. 24 9
82 43.05 temperature 25 14400 > th dose dependent rect. 2 1
86 43.06 wind 1 43200 > th dose dependent rect. 1 3
100 43.14 wind 7 43200 < th dose dependent rect. 1 3
108 43.21 wind 9 43200 < th dose independent rect. 18 1
117 43.29 wind 1 43200 < th dose independent rect. 18 18
121 43.30 wind 1 43200 > th dose independent rect. 13 17
127 43.33 wind 1 43200 < th dose independent rect. 12 18
130 43.34 wind 7 14400 > th dose dependent rect. 7 4
131 43.34 humidity 90 14400 > th dose dependent rect. 1 4
138 43.40 wind 5 14400 > th dose independent rect. 18 1
141 43.40 humidity 90 14400 > th dose dependent rect. 2 2
143 43.41 wind 7 43200 > th dose dependent rect. 18 1
147 43.43 wind 1 43200 > th dose dependent rect. 23 6
155 43.49 temperature 25 14400 > th dose independent rect. 2 1
161 43.53 wind 1 43200 > th dose independent rect. 18 17
162 43.53 wind 3 14400 > th dose dependent rect. 18 1
170 43.55 wind 9 43200 < th dose dependent rect. 23 6
171 43.56 radiation 40 1440 > th dose independent rect. 8 1
189 43.57 wind 1 43200 < th dose independent rect. 20 16
229 43.69 wind 7 14400 > th dose dependent rect. 9 2
248 43.75 wind 7 14400 > th dose independent rect. 10 1
249 43.75 humidity 90 14400 > th dose independent rect. 2 2
261 43.78 wind 7 14400 < th dose independent rect. 7 5
267 43.79 wind 1 43200 > th dose independent rect. 20 15
271 43.80 wind 7 14400 < th dose independent rect. 10 1
272 43.80 wind 7 14400 > th dose independent rect. 7 5
273 43.81 atmosphere 1005 14400 < th dose independent rect. 12 1
294 43.88 wind 7 14400 < th dose independent rect. 9 3
300 43.89 wind 7 14400 > th dose independent rect. 9 3
310 43.91 wind 3 43200 < th dose independent rect. 22 7
325 43.95 wind 5 14400 < th dose independent rect. 18 1
326 43.95 wind 1 43200 > th dose independent rect. 14 20
327 43.95 wind 1 43200 < th dose dependent rect. 3 21
328 43.96 atmosphere 1005 14400 < th dose independent rect. 17 1
335 43.97 wind 3 43200 > th dose independent rect. 22 7
338 43.98 atmosphere 1005 14400 < th dose independent rect. 12 6
355 44.03 atmosphere 1005 14400 > th dose independent rect. 12 1
358 44.03 wind 1 43200 < th dose dependent rect. 23 22
363 44.05 wind 3 43200 > th dose independent rect. 2 2
371 44.06 wind 1 43200 < th dose dependent rect. 1 23
387 44.09 radiation 20 1440 > th dose independent rect. 6 1
405 44.09 radiation 40 14400 > th dose dependent rect. 7 2
426 44.10 temperature 25 14400 < th dose independent rect. 3 2
439 44.11 wind 1 43200 < th dose independent rect. 14 21
442 44.11 wind 1 43200 < th dose dependent rect. 12 22
444 44.12 atmosphere 1005 43200 > th dose independent rect. 19 1
447 44.13 atmosphere 1005 14400 > th dose independent rect. 17 1
450 44.13 wind 3 1440 > th dose independent rect. 6 9
468 44.15 humidity 80 1440 > th dose dependent rect. 6 2
470 44.16 atmosphere 1005 43200 < th dose independent rect. 3 1
473 44.16 radiation 20 4320 > th dose dependent rect. 6 2
497 44.18 wind 3 1440 < th dose independent rect. 6 9
515 44.20 wind 9 14400 < th dose dependent rect. 18 1
535 44.23 atmosphere 1005 43200 > th dose independent rect. 3 1
541 44.24 wind 3 43200 < th dose independent rect. 2 2
543 44.24 atmosphere 1005 14400 > th dose independent rect. 11 7
552 44.25 humidity 90 14400 < th dose independent rect. 14 3
555 44.25 wind 1 43200 < th dose dependent rect. 18 23
556 44.25 wind 1 43200 < th dose dependent rect. 20 23
557 44.26 wind 1 43200 > th dose independent sin 8 NA
565 44.26 radiation 20 4320 < th dose independent rect. 17 15
576 44.28 radiation 20 4320 < th dose independent rect. 6 2
598 44.31 radiation 20 4320 < th dose independent rect. 22 10
635 44.35 humidity 90 14400 < th dose independent rect. 15 1
645 44.35 wind 1 43200 < th dose dependent rect. 9 23
661 44.37 wind 1 43200 < th dose dependent rect. 23 17
668 44.38 wind 3 1440 > th dose independent rect. 1 18
671 44.38 wind 1 43200 < th dose independent rect. 11 22
706 44.41 atmosphere 1005 43200 < th dose independent rect. 16 12
718 44.42 wind 3 1440 > th dose independent sin 2 NA
725 44.43 wind 9 14400 > th dose independent rect. 16 3
727 44.43 wind 3 1440 > th dose independent rect. 6 13
751 44.45 wind 1 43200 < th dose dependent rect. 18 20
755 44.46 atmosphere 1005 43200 < th dose independent rect. 17 6
759 44.46 wind 3 1440 < th dose independent rect. 1 18
767 44.47 wind 3 1440 < th dose independent sin 2 NA
768 44.47 radiation 10 43200 > th dose independent rect. 5 1
795 44.47 wind 1 43200 < th dose dependent rect. 16 22
835 44.50 wind 1 43200 < th dose dependent no NA NA
845 44.51 atmosphere 1005 43200 < th dose independent rect. 11 17
846 44.51 humidity 50 1440 > th dose dependent rect. 6 1
865 44.53 wind 3 1440 < th dose independent rect. 2 13
893 44.55 wind 3 1440 < th dose independent rect. 5 14
894 44.55 atmosphere 1005 43200 > th dose independent rect. 15 14
902 44.56 wind 3 1440 > th dose independent rect. 2 13
906 44.56 humidity 80 43200 > th dose dependent rect. 15 1
907 44.56 radiation 40 1440 > th dose dependent rect. 8 1
939 44.58 atmosphere 1005 43200 < th dose independent sin 16 NA
987 44.61 atmosphere 1005 43200 < th dose independent rect. 11 12
990 44.61 atmosphere 1005 43200 > th dose independent rect. 11 18