BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0419800 Os08g0419800|Os08g0419800
         (200 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0419800                                                      343   6e-95
Os08g0419700                                                      104   3e-23

>Os08g0419800 
          Length = 200

 Score =  343 bits (879), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 174/200 (87%), Positives = 174/200 (87%)

Query: 1   MAASHVAVRVQGEGSRXXXXXXXXXXXXXXXXXXXXXXXXXXHAIRIAVSGTGEDTEPDK 60
           MAASHVAVRVQGEGSR                          HAIRIAVSGTGEDTEPDK
Sbjct: 1   MAASHVAVRVQGEGSRANAVALQVSLAASLVVLPVVPVALSLHAIRIAVSGTGEDTEPDK 60

Query: 61  PAPESFAASVRASFSHPILAASAAITPFAVLVPVGNLVKGISAASGSRGERIGSAIEVVG 120
           PAPESFAASVRASFSHPILAASAAITPFAVLVPVGNLVKGISAASGSRGERIGSAIEVVG
Sbjct: 61  PAPESFAASVRASFSHPILAASAAITPFAVLVPVGNLVKGISAASGSRGERIGSAIEVVG 120

Query: 121 LVGFYPMFLFFFLPTAAWMVWRRVKLPAGHGQRVAPLSGMLHHVLRFIEIHPLVKSGEID 180
           LVGFYPMFLFFFLPTAAWMVWRRVKLPAGHGQRVAPLSGMLHHVLRFIEIHPLVKSGEID
Sbjct: 121 LVGFYPMFLFFFLPTAAWMVWRRVKLPAGHGQRVAPLSGMLHHVLRFIEIHPLVKSGEID 180

Query: 181 TVGFKRSAVKMDKDLEDDSC 200
           TVGFKRSAVKMDKDLEDDSC
Sbjct: 181 TVGFKRSAVKMDKDLEDDSC 200



>Os08g0419700 
          Length = 240

 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/158 (46%), Positives = 84/158 (53%), Gaps = 5/158 (3%)

Query: 1   MAASHVAVRVQGEGSRXXXXXXXXXXXXXXXXXXXXX-XXXXXHAIRIAVSGTGEDTEPD 59
           MAA  VA R  GEGSR                           HA+R+AVS T E  E  
Sbjct: 87  MAAQDVAARALGEGSRAYALAFEVSRVAVLLVFLPVFPFATLLHAVRLAVSDTDEPDE-- 144

Query: 60  KPAPESFAASVRASFSHPILAASAAITPFAVLVPVGNLVKGISAASGSRGERIGSAIEVV 119
           KPAP+SFAA+ R   S  I   S A+  F +LV +G LVKG SAA GS  E IGS I  V
Sbjct: 145 KPAPKSFAAAAREVLSDTICVGSIALMAFVLLVSLGALVKGDSAAKGSCREMIGSVIGDV 204

Query: 120 GLVGFYPMFLFFFLPTAAWMVWRRVKLPAGHGQRVAPL 157
           GLVGF+ + LF   P  A  VW RVKLP GHG RV P+
Sbjct: 205 GLVGFHVINLFVLTPNLALRVW-RVKLP-GHGHRVVPV 240



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,239,749
Number of extensions: 244859
Number of successful extensions: 708
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 705
Number of HSP's successfully gapped: 2
Length of query: 200
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 104
Effective length of database: 12,023,257
Effective search space: 1250418728
Effective search space used: 1250418728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)