Os08g0419800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os08g0419800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.45 | 0.246 | 9.75 | -1.06 | 0.644 | 0.993 | 0.715 | -0.868 | -0.0266 | 0.0702 | 28.9 | 10 | -- | -- |
| 28.25 | 0.248 | 9.77 | -1.21 | 0.651 | 1.01 | 0.451 | -- | -0.0626 | 23.9 | 28.68 | 30 | -- | -- |
| 29.04 | 0.251 | 9.76 | -1.18 | 0.638 | 1.03 | -- | -0.284 | -0.0406 | 24 | 28.7 | 31 | -- | -- |
| 29.11 | 0.251 | 9.77 | -1.23 | 0.643 | 1.03 | -- | -- | -0.0577 | 24 | 28.7 | 31 | -- | -- |
| 47.61 | 0.323 | 9.73 | -1.07 | -- | 1.57 | -- | -0.191 | 0.0468 | -- | 29.66 | 10 | -- | -- |
| 42.62 | 0.306 | 9.81 | -1.46 | 0.936 | -- | 0.512 | -- | -0.272 | 0.744 | -- | -- | -- | -- |
| 43.74 | 0.31 | 9.82 | -1.48 | 0.935 | -- | -- | -- | -0.275 | 0.768 | -- | -- | -- | -- |
| 47.62 | 0.321 | 9.73 | -1.1 | -- | 1.57 | -- | -- | 0.0397 | -- | 29.7 | 5 | -- | -- |
| 64.71 | 0.375 | 9.72 | -- | 0.546 | 1.46 | -- | -- | 0.16 | 23.3 | 28.45 | 63 | -- | -- |
| 98.35 | 0.463 | 9.8 | -1.45 | -- | -- | -- | -- | -0.258 | -- | -- | -- | -- | -- |
| 101.6 | 0.472 | 9.78 | -- | 0.912 | -- | -- | -- | -0.11 | 0.693 | -- | -- | -- | -- |
| 77.24 | 0.409 | 9.69 | -- | -- | 1.87 | -- | -- | 0.218 | -- | 29.38 | 8 | -- | -- |
| 153.64 | 0.579 | 9.76 | -- | -- | -- | -- | -- | -0.0971 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.48 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 2 | 27.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 4 | 27.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 6 | 27.58 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 9 | 27.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 10 | 27.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 13 | 27.86 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 14 | 27.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 18 | 27.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 22 | 28.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 23 | 28.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 26 | 28.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 22 |
| 32 | 28.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 34 | 28.59 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 87 | 29.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 100 | 29.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 109 | 29.63 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 23 |
| 110 | 29.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 136 | 29.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 139 | 29.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 23 |
| 179 | 29.85 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 185 | 29.86 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 205 | 29.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 234 | 29.98 | temperature | 30 | 1440 | < th | dose dependent | sin | 2 | NA |
| 243 | 29.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 23 |
| 323 | 30.12 | temperature | 20 | 90 | > th | dose dependent | rect. | 14 | 23 |
| 491 | 30.25 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 560 | 30.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 582 | 30.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 583 | 30.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 594 | 30.32 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 17 |
| 639 | 30.36 | temperature | 10 | 1440 | > th | dose dependent | sin | 4 | NA |
| 759 | 30.42 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 805 | 30.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 971 | 30.56 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 20 |