BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0381000 Os08g0381000|AK107533
(454 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0381000 Conserved hypothetical protein 418 e-117
Os09g0102200 72 1e-12
>Os08g0381000 Conserved hypothetical protein
Length = 454
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 255/454 (56%), Positives = 255/454 (56%)
Query: 1 NGIPSLRYIVLAPSRDXXXXXXXXXXXXXXXXXXGRLQPPLSPCLCVGWXXXXXXXXXXX 60
NGIPSLRYIVLAPSRD GRLQPPLSPCLCVGW
Sbjct: 1 NGIPSLRYIVLAPSRDLPWSLATSPPSSPLSRAAGRLQPPLSPCLCVGWPRHHLSRPRSR 60
Query: 61 XXXXXXXXVSRGDRRRLVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQHRPLHRP 120
VSRGDRRRLVPA QHRPLHRP
Sbjct: 61 LLSHGLPSVSRGDRRRLVPAVALLFPPRWPPPAAFPASPVRRPAVPSPPSALQHRPLHRP 120
Query: 121 HRLLAGNSPERCPRRQPVALVPLYSLQPXXXXXXXXXXXXXXXXXXXGIVSFPGVTSSSP 180
HRLLAGNSPERCPRRQPVALVPLYSLQP GIVSFPGVTSSSP
Sbjct: 121 HRLLAGNSPERCPRRQPVALVPLYSLQPAAVRRRCADRRRRLLLRHRGIVSFPGVTSSSP 180
Query: 181 EARRSGLLVGVQYLPVSGRLLYVAGAPIDVAIXXXXXXXXXXXXXXXXFRRNAVARAGLX 240
EARRSGLLVGVQYLPVSGRLLYVAGAPIDVAI FRRNAVARAGL
Sbjct: 181 EARRSGLLVGVQYLPVSGRLLYVAGAPIDVAISSVDVAALSSPPAAPLFRRNAVARAGLH 240
Query: 241 XXXXXXXXXXXXXXXXLVVSRCRLRHRICSGAFHVVPVSVQXXXXXXXXXXXXXXXXXXX 300
LVVSRCRLRHRICSGAFHVVPVSVQ
Sbjct: 241 PHRRRRPFGRPVHPRRLVVSRCRLRHRICSGAFHVVPVSVQLPPAALVVSSPAPVVVVVL 300
Query: 301 XXXXXXXXXXXXXXXXXXXKCXXXXXXXXXXXXXXXXXXXXXXLAFVQGXXXXXXXXXXX 360
KC LAFVQG
Sbjct: 301 IVVAFVPPSSRSRPSSAFVKCAAAAPSSSSSSAPRRQASCRPRLAFVQGSPPKPSPRRSS 360
Query: 361 XXXXXXXAAPVRRCRSHASSRGEVVSLPDLLQAERREINLRRAIPSRRPLFASTSNQKEA 420
AAPVRRCRSHASSRGEVVSLPDLLQAERREINLRRAIPSRRPLFASTSNQKEA
Sbjct: 361 PLCPSVSAAPVRRCRSHASSRGEVVSLPDLLQAERREINLRRAIPSRRPLFASTSNQKEA 420
Query: 421 SPVNDSNMQSYHIITEPIKDDAVTRTMPAISLQN 454
SPVNDSNMQSYHIITEPIKDDAVTRTMPAISLQN
Sbjct: 421 SPVNDSNMQSYHIITEPIKDDAVTRTMPAISLQN 454
>Os09g0102200
Length = 1463
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 45/82 (54%)
Query: 128 SPERCPRRQPVALVPLYSLQPXXXXXXXXXXXXXXXXXXXGIVSFPGVTSSSPEARRSGL 187
+P P VAL PL+ L+P PG+TSSSPEARRSGL
Sbjct: 612 TPGGAPPPATVALPPLFRLRPPLWRFPCAGRRRHHLPRLRDAALIPGITSSSPEARRSGL 671
Query: 188 LVGVQYLPVSGRLLYVAGAPID 209
LVGVQYLP SGRLLYVAG D
Sbjct: 672 LVGVQYLPASGRLLYVAGEEED 693
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,873,110
Number of extensions: 252831
Number of successful extensions: 486
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 4
Length of query: 454
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 350
Effective length of database: 11,605,545
Effective search space: 4061940750
Effective search space used: 4061940750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 158 (65.5 bits)