BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0368000 Os08g0368000|AK106813
         (184 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0368000  Similar to Coatomer delta subunit (Delta-coat ...   342   9e-95
Os05g0310800  Similar to Coatomer delta subunit (Delta-coat ...   278   1e-75
Os05g0311000  Clathrin adaptor complex, medium chain family ...   274   3e-74
Os01g0833700  Clathrin adaptor complex, medium chain family ...   267   3e-72

>Os08g0368000 Similar to Coatomer delta subunit (Delta-coat protein) (Delta-COP)
          Length = 184

 Score =  342 bits (877), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 169/184 (91%), Positives = 169/184 (91%)

Query: 1   MVVLAASIISKSGKALVSRQYVDMTRIRIEGLLAAFPKLVGNGKQHTYIETENVRYVYQP 60
           MVVLAASIISKSGKALVSRQYVDMTRIRIEGLLAAFPKLVGNGKQHTYIETENVRYVYQP
Sbjct: 1   MVVLAASIISKSGKALVSRQYVDMTRIRIEGLLAAFPKLVGNGKQHTYIETENVRYVYQP 60

Query: 61  IEGLYLVVITNKQSNILEDLDTLRLLSKLVPEYCPSLDDDGVCKTAFELIFAFDEAISLG 120
           IEGLYLVVITNKQSNILEDLDTLRLLSKLVPEYCPSLDDDGVCKTAFELIFAFDEAISLG
Sbjct: 61  IEGLYLVVITNKQSNILEDLDTLRLLSKLVPEYCPSLDDDGVCKTAFELIFAFDEAISLG 120

Query: 121 NKEKVTVQQVKEYCEMDSVXXXXXXXXXXXXXXXTKDFMKKKVIEIEKTRVHPTLFLQTN 180
           NKEKVTVQQVKEYCEMDSV               TKDFMKKKVIEIEKTRVHPTLFLQTN
Sbjct: 121 NKEKVTVQQVKEYCEMDSVEEMEYKQMMQEKIKETKDFMKKKVIEIEKTRVHPTLFLQTN 180

Query: 181 MTSI 184
           MTSI
Sbjct: 181 MTSI 184



>Os05g0310800 Similar to Coatomer delta subunit (Delta-coat protein) (Delta-COP)
          Length = 524

 Score =  278 bits (712), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 135/172 (78%), Positives = 148/172 (86%)

Query: 1   MVVLAASIISKSGKALVSRQYVDMTRIRIEGLLAAFPKLVGNGKQHTYIETENVRYVYQP 60
           MVVLAASIISKSGKALVSRQ+VDM+RIRIEGLLAAFPKLVG GKQHTY+ETENVRYVYQP
Sbjct: 1   MVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60

Query: 61  IEGLYLVVITNKQSNILEDLDTLRLLSKLVPEYCPSLDDDGVCKTAFELIFAFDEAISLG 120
           IEGLYL++ITNKQSNILEDLDTLRLLSKLVPEY PSLD++GVCKTAFELIFAFDEAISLG
Sbjct: 61  IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAISLG 120

Query: 121 NKEKVTVQQVKEYCEMDSVXXXXXXXXXXXXXXXTKDFMKKKVIEIEKTRVH 172
           NKE VTVQQVK+YCEM+S                T+D MKKK  E++K R+ 
Sbjct: 121 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMRME 172



>Os05g0311000 Clathrin adaptor complex, medium chain family protein
          Length = 523

 Score =  274 bits (701), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 133/172 (77%), Positives = 147/172 (85%)

Query: 1   MVVLAASIISKSGKALVSRQYVDMTRIRIEGLLAAFPKLVGNGKQHTYIETENVRYVYQP 60
           MVVLAASIISKSGKALVSRQ+VDM+RIRIEGLLAAFPKLVG GKQHTY+ETENVRYVYQP
Sbjct: 1   MVVLAASIISKSGKALVSRQFVDMSRIRIEGLLAAFPKLVGTGKQHTYVETENVRYVYQP 60

Query: 61  IEGLYLVVITNKQSNILEDLDTLRLLSKLVPEYCPSLDDDGVCKTAFELIFAFDEAISLG 120
           IEGLYL++ITNKQSNILEDLDTLRLLSKLVPEY PSLD++GVCKTAFELIFAFDEAI LG
Sbjct: 61  IEGLYLLLITNKQSNILEDLDTLRLLSKLVPEYSPSLDEEGVCKTAFELIFAFDEAICLG 120

Query: 121 NKEKVTVQQVKEYCEMDSVXXXXXXXXXXXXXXXTKDFMKKKVIEIEKTRVH 172
           NKE VTVQQVK+YCEM+S                T+D MKKK  E++K ++ 
Sbjct: 121 NKENVTVQQVKQYCEMESHEEKAHKLMMQSKINETRDVMKKKASELDKMKME 172



>Os01g0833700 Clathrin adaptor complex, medium chain family protein
          Length = 518

 Score =  267 bits (683), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 129/170 (75%), Positives = 146/170 (85%)

Query: 1   MVVLAASIISKSGKALVSRQYVDMTRIRIEGLLAAFPKLVGNGKQHTYIETENVRYVYQP 60
           MVVLAASIISKSGKALVSRQ+VDM+RIRI+GLLAAFPKLVG+GKQHTY+ETENVRYVYQP
Sbjct: 1   MVVLAASIISKSGKALVSRQFVDMSRIRIDGLLAAFPKLVGSGKQHTYVETENVRYVYQP 60

Query: 61  IEGLYLVVITNKQSNILEDLDTLRLLSKLVPEYCPSLDDDGVCKTAFELIFAFDEAISLG 120
           IE LYL++ITNKQSNILEDLDTLRLLSKL+PEY PSLD++GVCK AFEL+FAF EAISLG
Sbjct: 61  IEALYLLLITNKQSNILEDLDTLRLLSKLIPEYAPSLDEEGVCKAAFELLFAFIEAISLG 120

Query: 121 NKEKVTVQQVKEYCEMDSVXXXXXXXXXXXXXXXTKDFMKKKVIEIEKTR 170
           NKE VTV QVK+YCEM+S                TKD M++KV EIEK++
Sbjct: 121 NKENVTVAQVKQYCEMESHEEKLHKLVMQSKINETKDVMRRKVTEIEKSK 170



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,722,144
Number of extensions: 163160
Number of successful extensions: 364
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 361
Number of HSP's successfully gapped: 4
Length of query: 184
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 89
Effective length of database: 12,075,471
Effective search space: 1074716919
Effective search space used: 1074716919
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)