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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0368000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Coatomer delta subunit (Delta-coat protein) (Delta-COP).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.41 (0.0345) R2 : 0.158
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.832 (0.0901) R2dC : 0.158 R2C : 0.158
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0282 (0.0726) R2dN8 : 0.00036 R2N8 : 0.000166
σ : 0.65
deviance : 193.35
__
_____
C
peak time of C : 17.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
183.16 0.636 5.42 -0.0301 0.764 -0.398 -0.424 -1.02 -0.0493 18.7 19.66 94 -- --
187.15 0.637 5.42 -0.0378 0.769 -0.422 -0.618 -- -0.0584 18.7 20.1 94 -- --
183.59 0.631 5.42 -0.0234 0.763 -0.404 -- -1.07 -0.0479 18.7 19.65 94 -- --
187.91 0.638 5.42 -0.0266 0.761 -0.427 -- -- -0.0654 18.7 20.1 94 -- --
209.13 0.674 5.4 0.0177 -- -0.513 -- -0.954 -0.0691 -- 12.99 291 -- --
193.24 0.652 5.41 0.0358 0.834 -- -0.187 -- -0.0234 17.3 -- -- -- --
193.32 0.651 5.41 0.0364 0.832 -- -- -- -0.0241 17.3 -- -- -- --
193.94 0.649 5.39 -0.165 -- -0.86 -- -- -0.0724 -- 0.35 667 -- --
187.92 0.638 5.42 -- 0.76 -0.425 -- -- -0.0616 18.7 20.22 94 -- --
229.47 0.708 5.4 0.00768 -- -- -- -- -0.0449 -- -- -- -- --
193.35 0.65 5.41 -- 0.832 -- -- -- -0.0282 17.3 -- -- -- --
193.09 0.647 5.4 -- -- -0.934 -- -- -0.0591 -- 0.3 644 -- --
229.48 0.707 5.4 -- -- -- -- -- -0.0458 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 175.39 wind 1.0 10 > th dose independent rect. 1 7
6 177.01 temperature 15.0 90 > th dose independent rect. 8 17
8 177.49 humidity 90.0 270 < th dose independent rect. 3 2
9 177.53 wind 5.0 90 < th dose independent rect. 1 7
14 177.92 radiation 30.0 90 < th dose independent rect. 11 21
17 178.11 temperature 10.0 43200 > th dose independent rect. 9 7
18 178.12 temperature 20.0 90 < th dose independent rect. 6 1
20 178.13 humidity 90.0 30 < th dose independent rect. 8 8
21 178.21 humidity 80.0 90 < th dose independent rect. 6 1
24 178.36 precipitation 0.1 90 < th dose independent rect. 8 17
25 178.36 precipitation 0.1 90 < th dose dependent rect. 8 17
26 178.42 temperature 15.0 10 > th dose independent rect. 8 16
28 178.47 atmosphere 1015.0 10 < th dose dependent rect. 24 8
33 178.51 temperature 10.0 90 > th dose independent rect. 1 7
35 178.51 temperature 30.0 90 < th dose independent rect. 1 7
36 178.51 humidity 50.0 90 > th dose independent rect. 1 7
38 178.51 atmosphere 995.0 90 > th dose independent rect. 1 7
39 178.51 atmosphere 1015.0 90 < th dose independent rect. 1 7
44 178.54 wind 9.0 90 < th dose independent rect. 8 17
45 178.56 humidity 80.0 90 < th dose dependent rect. 6 1
46 178.56 wind 3.0 90 > th dose dependent rect. 3 5
47 178.66 wind 9.0 10 < th dose independent rect. 8 16
50 178.69 radiation 40.0 90 < th dose independent rect. 1 7
59 178.90 precipitation 0.1 10 < th dose independent rect. 8 16
60 178.90 precipitation 0.1 10 < th dose dependent rect. 8 16
62 178.92 atmosphere 1005.0 30 > th dose dependent rect. 2 6
76 179.02 radiation 40.0 90 < th dose dependent rect. 10 22
78 179.03 temperature 10.0 10 > th dose independent rect. 24 8
79 179.03 temperature 30.0 10 < th dose independent rect. 24 8
80 179.03 humidity 50.0 10 > th dose independent rect. 24 8
82 179.03 atmosphere 995.0 10 > th dose independent rect. 24 8
99 179.09 wind 9.0 1440 < th dose independent rect. 2 7
100 179.09 temperature 10.0 1440 > th dose independent rect. 2 7
103 179.09 humidity 50.0 1440 > th dose independent rect. 2 7
105 179.09 atmosphere 995.0 1440 > th dose independent rect. 2 7
106 179.09 temperature 10.0 1440 > th dose independent rect. 9 17
135 179.18 wind 1.0 10 > th dose independent rect. 15 17
138 179.22 atmosphere 1015.0 90 < th dose independent rect. 8 17
140 179.24 precipitation 0.1 90 < th dose independent rect. 1 7
141 179.24 precipitation 0.1 90 < th dose dependent rect. 1 7
144 179.27 atmosphere 995.0 90 > th dose independent rect. 8 17
148 179.35 atmosphere 995.0 10 > th dose independent rect. 8 8
159 179.39 wind 1.0 90 > th dose dependent rect. 1 7
172 179.52 atmosphere 1015.0 10 < th dose independent rect. 8 16
178 179.56 wind 1.0 270 > th dose independent rect. 15 14
182 179.59 atmosphere 995.0 10 > th dose independent rect. 8 16
183 179.63 wind 9.0 10 < th dose independent rect. 8 8
191 179.74 wind 1.0 270 > th dose independent rect. 10 22
193 179.76 temperature 15.0 90 > th dose independent rect. 8 7
202 179.94 wind 5.0 30 > th dose independent rect. 24 9
208 180.01 wind 3.0 90 > th dose dependent rect. 4 3
223 180.16 wind 5.0 10 > th dose dependent rect. 1 8
225 180.17 temperature 10.0 10 > th dose independent rect. 8 8
227 180.17 atmosphere 1015.0 10 < th dose independent rect. 8 8
228 180.17 precipitation 0.1 10 < th dose independent rect. 8 8
229 180.17 temperature 10.0 10 > th dose independent rect. 16 16
230 180.17 atmosphere 995.0 10 > th dose independent rect. 16 16
231 180.17 precipitation 0.1 10 < th dose dependent rect. 8 8
240 180.22 precipitation 0.1 90 < th dose independent rect. 8 7
241 180.22 precipitation 0.1 90 < th dose dependent rect. 8 7
245 180.23 wind 9.0 30 < th dose independent rect. 16 16
248 180.26 radiation 20.0 90 < th dose independent rect. 23 22
281 180.40 radiation 20.0 270 < th dose dependent rect. 23 14
293 180.46 temperature 10.0 90 > th dose dependent rect. 24 8
294 180.47 radiation 1.0 10 > th dose independent rect. 8 8
298 180.49 humidity 90.0 90 < th dose dependent rect. 2 6
301 180.51 radiation 40.0 90 < th dose independent rect. 15 17
302 180.51 temperature 10.0 10 > th dose dependent rect. 24 8
307 180.55 radiation 20.0 90 > th dose independent rect. 8 7
310 180.56 radiation 10.0 270 < th dose independent rect. 23 14
317 180.59 humidity 90.0 90 < th dose independent rect. 2 6
339 180.61 humidity 90.0 270 < th dose independent rect. 8 2
341 180.61 atmosphere 1015.0 90 < th dose dependent rect. 15 17
351 180.64 atmosphere 1000.0 270 > th dose independent rect. 19 14
352 180.65 temperature 10.0 1440 > th dose independent rect. 9 7
355 180.65 temperature 10.0 1440 > th dose independent rect. 16 17
363 180.67 atmosphere 1000.0 90 > th dose independent rect. 21 13
380 180.74 radiation 1.0 90 > th dose independent rect. 8 7
387 180.75 radiation 40.0 90 < th dose dependent rect. 23 22
388 180.76 atmosphere 1015.0 1440 < th dose independent rect. 2 7
424 180.88 temperature 25.0 720 < th dose independent rect. 23 6
430 180.90 wind 1.0 30 > th dose independent rect. 8 8
431 180.90 wind 1.0 43200 < th dose independent rect. 4 21
457 181.02 temperature 10.0 30 > th dose dependent rect. 8 7
481 181.07 humidity 90.0 90 < th dose dependent rect. 5 3
491 181.10 wind 1.0 270 > th dose independent rect. 23 20
504 181.13 wind 1.0 43200 > th dose independent rect. 4 21
512 181.16 atmosphere 995.0 10 > th dose dependent rect. 8 8
530 181.21 radiation 20.0 30 < th dose independent rect. 5 23
533 181.23 temperature 25.0 4320 < th dose independent rect. 2 1
554 181.28 radiation 1.0 90 > th dose dependent rect. 8 7
558 181.30 wind 1.0 43200 < th dose dependent rect. 6 8
562 181.31 wind 1.0 30 > th dose independent rect. 8 18
576 181.36 radiation 10.0 270 > th dose independent rect. 8 1
579 181.36 atmosphere 1000.0 10 > th dose independent rect. 21 14
580 181.36 atmosphere 995.0 30 > th dose dependent rect. 8 18
582 181.37 wind 1.0 30 > th dose independent rect. 8 16
585 181.38 temperature 15.0 270 > th dose independent rect. 6 17
595 181.41 humidity 90.0 10 < th dose independent rect. 3 5
601 181.42 wind 5.0 10 > th dose independent rect. 7 2
608 181.46 wind 1.0 30 > th dose independent rect. 2 18
609 181.46 wind 5.0 10 > th dose dependent rect. 7 2
636 181.51 wind 1.0 43200 < th dose independent rect. 6 8
668 181.59 humidity 50.0 30 > th dose independent rect. 8 18
670 181.59 wind 9.0 90 < th dose dependent rect. 1 7
677 181.60 wind 1.0 43200 < th dose dependent rect. 6 16
711 181.70 wind 1.0 43200 < th dose dependent rect. 6 11
729 181.73 wind 1.0 43200 < th dose dependent rect. 6 14
742 181.76 humidity 50.0 10 > th dose independent rect. 16 16
745 181.77 humidity 50.0 90 > th dose independent rect. 17 15
756 181.78 temperature 20.0 90 < th dose dependent rect. 6 1
771 181.81 radiation 40.0 90 < th dose dependent rect. 1 7
781 181.83 radiation 10.0 270 < th dose independent rect. 23 10
808 181.87 radiation 10.0 270 < th dose independent sin 7 NA
813 181.87 radiation 1.0 43200 < th dose dependent rect. 21 6
838 181.92 humidity 90.0 30 < th dose dependent rect. 8 7
840 181.93 precipitation 0.1 30 < th dose independent rect. 16 16
841 181.93 precipitation 0.1 30 < th dose dependent rect. 16 16
846 181.94 wind 1.0 43200 < th dose dependent rect. 5 19
849 181.95 temperature 30.0 30 < th dose dependent rect. 2 6
858 181.98 precipitation 0.1 270 < th dose independent rect. 6 17
861 181.98 precipitation 0.1 270 < th dose dependent rect. 6 17
869 182.00 temperature 15.0 270 > th dose independent rect. 5 10
888 182.05 atmosphere 1015.0 10 < th dose independent rect. 16 16
890 182.05 radiation 30.0 270 < th dose dependent sin 7 NA
915 182.10 humidity 70.0 10 > th dose independent rect. 21 14
931 182.14 radiation 40.0 10 < th dose dependent rect. 20 15
933 182.15 radiation 20.0 90 > th dose independent sin 4 NA
943 182.16 wind 1.0 43200 < th dose independent rect. 6 13
962 182.19 temperature 10.0 90 > th dose dependent rect. 15 17
979 182.23 precipitation 0.1 270 < th dose independent rect. 5 10
980 182.23 wind 1.0 43200 < th dose independent rect. 6 15
983 182.23 precipitation 0.1 270 < th dose dependent rect. 5 10
988 182.24 wind 1.0 43200 < th dose dependent rect. 7 4
989 182.25 wind 1.0 43200 < th dose independent sin 23 NA
998 182.26 radiation 10.0 43200 > th dose independent rect. 17 13