BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0347200 Os08g0347200|AK058279
         (91 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0347200  Hypothetical protein                                179   5e-46
Os11g0170400  Conserved hypothetical protein                      119   5e-28
Os12g0108201  Hypothetical protein                                106   3e-24

>Os08g0347200 Hypothetical protein
          Length = 91

 Score =  179 bits (453), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 91/91 (100%), Positives = 91/91 (100%)

Query: 1  MHDLLRRHNPCSRIHRRSSPRTVAIGLATDHCLISVHGSGVFFCSSSLLGCSVHLLWISL 60
          MHDLLRRHNPCSRIHRRSSPRTVAIGLATDHCLISVHGSGVFFCSSSLLGCSVHLLWISL
Sbjct: 1  MHDLLRRHNPCSRIHRRSSPRTVAIGLATDHCLISVHGSGVFFCSSSLLGCSVHLLWISL 60

Query: 61 VSLLHSLPSFIPFLHPSLVNYISGCKPARWS 91
          VSLLHSLPSFIPFLHPSLVNYISGCKPARWS
Sbjct: 61 VSLLHSLPSFIPFLHPSLVNYISGCKPARWS 91



>Os11g0170400 Conserved hypothetical protein
          Length = 96

 Score =  119 bits (298), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 58/60 (96%), Positives = 58/60 (96%)

Query: 1  MHDLLRRHNPCSRIHRRSSPRTVAIGLATDHCLISVHGSGVFFCSSSLLGCSVHLLWISL 60
          MHDLLRRHNPCSRIHRRSSPRTVA GLATD CLISVHGSGVFFCSSSLLGCSVHLLWISL
Sbjct: 1  MHDLLRRHNPCSRIHRRSSPRTVATGLATDQCLISVHGSGVFFCSSSLLGCSVHLLWISL 60



>Os12g0108201 Hypothetical protein
          Length = 96

 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 54/60 (90%)

Query: 1  MHDLLRRHNPCSRIHRRSSPRTVAIGLATDHCLISVHGSGVFFCSSSLLGCSVHLLWISL 60
          MHDLLRRHNPCSRIHRRSSPRTVA GLATD CL+SVH S VF CSSSLLGCSVHL WISL
Sbjct: 1  MHDLLRRHNPCSRIHRRSSPRTVATGLATDQCLLSVHESWVFLCSSSLLGCSVHLHWISL 60



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.139    0.475 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,614,642
Number of extensions: 132818
Number of successful extensions: 420
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 3
Length of query: 91
Length of database: 17,035,801
Length adjustment: 61
Effective length of query: 30
Effective length of database: 13,850,747
Effective search space: 415522410
Effective search space used: 415522410
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)