Os08g0347200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os08g0347200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.13 | 0.376 | 7.46 | -1.17 | 0.581 | -0.851 | -0.697 | 0.478 | 0.0936 | 18 | 11.33 | 9093 | -- | -- |
| 64.39 | 0.374 | 7.47 | -1.24 | 0.559 | -0.88 | -0.724 | -- | 0.0801 | 18.1 | 12.53 | 9745 | -- | -- |
| 65.32 | 0.376 | 7.46 | -1.17 | 0.577 | -0.849 | -- | 0.488 | 0.0905 | 18.1 | 10.41 | 9096 | -- | -- |
| 65.54 | 0.377 | 7.48 | -1.25 | 0.56 | -0.873 | -- | -- | 0.069 | 18.2 | 9.568 | 9721 | -- | -- |
| 81.53 | 0.421 | 7.45 | -1.18 | -- | -0.886 | -- | 0.29 | 0.0875 | -- | 8.942 | 9930 | -- | -- |
| 77.06 | 0.412 | 7.54 | -1.76 | 0.581 | -- | -0.695 | -- | -0.201 | 17.9 | -- | -- | -- | -- |
| 78.25 | 0.414 | 7.54 | -1.75 | 0.577 | -- | -- | -- | -0.204 | 17.9 | -- | -- | -- | -- |
| 81.6 | 0.421 | 7.46 | -1.24 | -- | -0.907 | -- | -- | 0.0685 | -- | 10.27 | 9942 | -- | -- |
| 72.62 | 0.397 | 7.39 | -- | 0.569 | -1.5 | -- | -- | 0.438 | 18.1 | 7.289 | 47520 | -- | -- |
| 95.52 | 0.457 | 7.53 | -1.77 | -- | -- | -- | -- | -0.217 | -- | -- | -- | -- | -- |
| 159.02 | 0.59 | 7.49 | -- | 0.604 | -- | -- | -- | -0.00912 | 17.8 | -- | -- | -- | -- |
| 89.4 | 0.44 | 7.38 | -- | -- | -1.51 | -- | -- | 0.432 | -- | 7.033 | 47520 | -- | -- |
| 177.97 | 0.623 | 7.48 | -- | -- | -- | -- | -- | -0.0213 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.20 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 2 | 61.38 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 3 | 61.38 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 22 | 61.90 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 25 | 61.94 | wind | 9 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 94 | 62.75 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 11 |
| 95 | 62.75 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 97 | 62.76 | wind | 5 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 118 | 62.86 | wind | 3 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 121 | 62.89 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 126 | 62.91 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 9 |
| 128 | 62.93 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 131 | 62.93 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 19 |
| 132 | 62.93 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 14 |
| 136 | 62.94 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 19 |
| 152 | 62.99 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 11 |
| 157 | 63.01 | wind | 5 | 43200 | > th | dose independent | sin | 12 | NA |
| 167 | 63.03 | wind | 5 | 43200 | < th | dose independent | sin | 12 | NA |
| 197 | 63.12 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 14 |
| 200 | 63.12 | wind | 7 | 43200 | > th | dose dependent | sin | 15 | NA |
| 210 | 63.15 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 14 |
| 240 | 63.21 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 17 |
| 245 | 63.22 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 17 |
| 250 | 63.22 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 252 | 63.23 | wind | 9 | 43200 | < th | dose independent | sin | 14 | NA |
| 281 | 63.27 | wind | 3 | 43200 | > th | dose dependent | rect. | 19 | 19 |
| 303 | 63.29 | wind | 1 | 43200 | < th | dose dependent | rect. | 3 | 23 |
| 323 | 63.31 | wind | 3 | 43200 | > th | dose dependent | rect. | 17 | 19 |
| 348 | 63.34 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 19 |
| 367 | 63.36 | wind | 3 | 43200 | > th | dose dependent | sin | 11 | NA |
| 372 | 63.37 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 404 | 63.41 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 412 | 63.41 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 21 |
| 413 | 63.42 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 423 | 63.42 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 19 |
| 443 | 63.44 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 451 | 63.46 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 465 | 63.46 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 22 |
| 478 | 63.48 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 491 | 63.49 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 21 |
| 533 | 63.53 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 21 |
| 542 | 63.54 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 558 | 63.55 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 22 |
| 595 | 63.58 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 22 |
| 612 | 63.59 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 635 | 63.60 | wind | 7 | 43200 | > th | dose independent | rect. | 21 | 23 |
| 637 | 63.60 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 639 | 63.60 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 15 |
| 658 | 63.61 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 675 | 63.62 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 716 | 63.64 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 745 | 63.65 | wind | 7 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 787 | 63.67 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 809 | 63.68 | wind | 3 | 43200 | > th | dose dependent | rect. | 1 | 13 |
| 813 | 63.68 | wind | 5 | 43200 | > th | dose dependent | rect. | 1 | 22 |
| 863 | 63.71 | wind | 5 | 43200 | > th | dose independent | sin | 6 | NA |
| 886 | 63.72 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 18 |
| 917 | 63.73 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 962 | 63.75 | wind | 3 | 43200 | > th | dose dependent | rect. | 9 | 3 |