BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0338200 Os08g0338200|AK068124
         (604 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0338200  BSD domain containing protein                      1219   0.0  

>Os08g0338200 BSD domain containing protein
          Length = 604

 Score = 1219 bits (3155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 591/604 (97%), Positives = 591/604 (97%)

Query: 1   MGSMTIGAKYKTTLKDPGTTGVLRMNEDKFTFTPHDPRSAMKLNVDFRSIKGHKFNKVDG 60
           MGSMTIGAKYKTTLKDPGTTGVLRMNEDKFTFTPHDPRSAMKLNVDFRSIKGHKFNKVDG
Sbjct: 1   MGSMTIGAKYKTTLKDPGTTGVLRMNEDKFTFTPHDPRSAMKLNVDFRSIKGHKFNKVDG 60

Query: 61  SKPAPPLLNLSKDSDKGGGYMFEFDNVTNRDLSRDFVAKVLGKQQGTIPPKPNVPPENSV 120
           SKPAPPLLNLSKDSDKGGGYMFEFDNVTNRDLSRDFVAKVLGKQQGTIPPKPNVPPENSV
Sbjct: 61  SKPAPPLLNLSKDSDKGGGYMFEFDNVTNRDLSRDFVAKVLGKQQGTIPPKPNVPPENSV 120

Query: 121 TSTGEEQLSAAEMQRRMKLLQEDSELQKLHMKFVLGNILQESEFWATRKNLLEDEANKGS 180
           TSTGEEQLSAAEMQRRMKLLQEDSELQKLHMKFVLGNILQESEFWATRKNLLEDEANKGS
Sbjct: 121 TSTGEEQLSAAEMQRRMKLLQEDSELQKLHMKFVLGNILQESEFWATRKNLLEDEANKGS 180

Query: 181 KQRPGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLDFVPKKMSEKD 240
           KQRPGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLDFVPKKMSEKD
Sbjct: 181 KQRPGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLDFVPKKMSEKD 240

Query: 241 FWTKYFRAEYLLRTKNTVXXXXXXXXXXXXXIFLKNDDILAKEARLKIKRVDPTLDMEAD 300
           FWTKYFRAEYLLRTKNTV             IFLKNDDILAKEARLKIKRVDPTLDMEAD
Sbjct: 241 FWTKYFRAEYLLRTKNTVAATAEAAEDEELAIFLKNDDILAKEARLKIKRVDPTLDMEAD 300

Query: 301 AGDDYIHLPDHGIIRDGSKETIDNDGELARRTLSQDLNRHAAVVLEGRSSDVELTDTKTV 360
           AGDDYIHLPDHGIIRDGSKETIDNDGELARRTLSQDLNRHAAVVLEGRSSDVELTDTKTV
Sbjct: 301 AGDDYIHLPDHGIIRDGSKETIDNDGELARRTLSQDLNRHAAVVLEGRSSDVELTDTKTV 360

Query: 361 AEAIARSKKEPPSSSISDDTNHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPREYFDSQ 420
           AEAIARSKKEPPSSSISDDTNHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPREYFDSQ
Sbjct: 361 AEAIARSKKEPPSSSISDDTNHERLVKVARMTEIEDLQAPRSLPYAPLCIKDPREYFDSQ 420

Query: 421 QANALRSLGGNNDGRHARNCRLSTDDAFDHLLGQISSIKVNGLNYPVIQSDVALKVLNEL 480
           QANALRSLGGNNDGRHARNCRLSTDDAFDHLLGQISSIKVNGLNYPVIQSDVALKVLNEL
Sbjct: 421 QANALRSLGGNNDGRHARNCRLSTDDAFDHLLGQISSIKVNGLNYPVIQSDVALKVLNEL 480

Query: 481 NEGISRSRRLNLKNPQDSLLGQIPRRTRDELMDHWAAIQELLQHFWSSYPITTSVLYNKV 540
           NEGISRSRRLNLKNPQDSLLGQIPRRTRDELMDHWAAIQELLQHFWSSYPITTSVLYNKV
Sbjct: 481 NEGISRSRRLNLKNPQDSLLGQIPRRTRDELMDHWAAIQELLQHFWSSYPITTSVLYNKV 540

Query: 541 QRIKDAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFNHDLEQQQKSSKSGNK 600
           QRIKDAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFNHDLEQQQKSSKSGNK
Sbjct: 541 QRIKDAMTQIYQKLQDIKESAQPDVRHEISQLVKPMTQALDAAFNHDLEQQQKSSKSGNK 600

Query: 601 PNGF 604
           PNGF
Sbjct: 601 PNGF 604



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,896,375
Number of extensions: 813173
Number of successful extensions: 2037
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2037
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 497
Effective length of database: 11,448,903
Effective search space: 5690104791
Effective search space used: 5690104791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 159 (65.9 bits)