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Os08g0338200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : BSD domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.013) R2 : 0.178
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.272 (0.0274) R2dN8 : 0.23 R2N8 : 0.178
σ : 0.245
deviance : 27.49
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.37 0.184 11.4 -0.377 0.369 -0.146 -0.256 -1.73 0.212 21.6 30.1 252 -- --
15.64 0.184 11.4 -0.232 0.373 -0.343 -0.293 -- 0.227 21.5 30.06 250 -- --
15.62 0.184 11.4 -0.37 0.372 -0.149 -- -1.77 0.212 21.6 30.1 251 -- --
15.9 0.186 11.4 -0.217 0.374 -0.348 -- -- 0.223 21.5 30.06 254 -- --
23.44 0.225 11.4 -0.369 -- -0.0689 -- -1.82 0.223 -- 30.3 183 -- --
18.42 0.201 11.4 -0.276 0.336 -- -0.266 -- 0.241 22.5 -- -- -- --
18.7 0.202 11.4 -0.266 0.337 -- -- -- 0.241 22.7 -- -- -- --
23.73 0.227 11.4 -0.225 -- -0.255 -- -- 0.228 -- 29.97 199 -- --
17.1 0.193 11.4 -- 0.38 -0.378 -- -- 0.247 21.3 29.9 263 -- --
25.72 0.237 11.4 -0.259 -- -- -- -- 0.243 -- -- -- -- --
20.56 0.212 11.4 -- 0.335 -- -- -- 0.271 22.6 -- -- -- --
25.05 0.233 11.4 -- -- -0.289 -- -- 0.241 -- 29.9 194 -- --
27.49 0.245 11.4 -- -- -- -- -- 0.272 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.16 temperature 30.0 270 < th dose independent rect. 8 16
9 14.39 temperature 30.0 270 < th dose independent rect. 6 21
10 14.41 temperature 30.0 270 < th dose independent rect. 7 8
18 14.56 temperature 30.0 270 < th dose independent rect. 17 21
32 14.74 humidity 60.0 270 > th dose independent rect. 8 16
43 14.85 humidity 60.0 270 > th dose independent rect. 7 7
52 14.90 atmosphere 1015.0 270 < th dose dependent rect. 13 4
53 14.92 humidity 90.0 270 < th dose dependent rect. 12 6
54 14.92 temperature 10.0 10 > th dose dependent rect. 15 18
58 14.94 humidity 80.0 10 < th dose independent rect. 15 6
59 14.94 temperature 15.0 270 > th dose dependent rect. 13 5
63 14.95 humidity 90.0 270 < th dose dependent rect. 13 4
65 14.95 atmosphere 1015.0 270 < th dose dependent rect. 12 6
75 14.97 precipitation 0.1 90 < th dose independent rect. 15 17
79 14.97 precipitation 0.1 90 < th dose dependent rect. 15 17
80 14.98 atmosphere 995.0 90 > th dose independent rect. 8 7
85 14.99 humidity 70.0 270 < th dose independent rect. 13 4
91 15.00 humidity 90.0 10 < th dose dependent rect. 15 6
97 15.02 temperature 15.0 10 > th dose dependent rect. 15 6
117 15.06 radiation 40.0 90 < th dose independent rect. 15 17
121 15.06 radiation 10.0 270 < th dose dependent rect. 17 9
122 15.07 temperature 10.0 90 > th dose independent rect. 8 7
123 15.07 atmosphere 1015.0 90 < th dose independent rect. 8 7
124 15.07 precipitation 0.1 90 < th dose independent rect. 8 7
126 15.07 temperature 10.0 90 > th dose independent rect. 15 17
129 15.07 precipitation 0.1 90 < th dose dependent rect. 8 7
131 15.07 radiation 10.0 270 < th dose dependent rect. 15 11
135 15.09 temperature 30.0 270 < th dose independent rect. 17 9
141 15.10 wind 9.0 90 < th dose independent rect. 15 17
148 15.10 atmosphere 1015.0 10 < th dose dependent rect. 14 7
151 15.11 wind 9.0 90 < th dose independent rect. 8 7
164 15.13 radiation 10.0 270 < th dose dependent sin 15 NA
186 15.16 humidity 60.0 270 > th dose independent rect. 17 9
188 15.16 humidity 60.0 270 > th dose independent rect. 17 21
206 15.18 radiation 1.0 270 < th dose independent rect. 17 9
207 15.18 temperature 30.0 270 < th dose independent rect. 23 23
222 15.20 temperature 30.0 270 > th dose independent rect. 10 7
226 15.20 wind 9.0 10 < th dose independent rect. 15 18
235 15.21 temperature 10.0 10 > th dose independent rect. 9 6
238 15.21 atmosphere 995.0 10 > th dose independent rect. 9 6
239 15.21 atmosphere 1015.0 10 < th dose independent rect. 9 6
240 15.21 precipitation 0.1 10 < th dose independent rect. 9 6
243 15.21 temperature 10.0 10 > th dose independent rect. 15 18
248 15.21 precipitation 0.1 10 < th dose dependent rect. 9 6
251 15.21 radiation 10.0 270 < th dose dependent rect. 9 17
272 15.24 radiation 30.0 270 < th dose independent rect. 23 9
274 15.24 radiation 1.0 270 > th dose independent rect. 13 16
278 15.24 humidity 60.0 270 > th dose independent rect. 18 19
288 15.25 radiation 1.0 270 > th dose independent rect. 13 6
289 15.25 wind 1.0 90 > th dose independent rect. 8 7
293 15.25 wind 9.0 270 < th dose independent rect. 23 9
323 15.26 temperature 10.0 270 > th dose independent rect. 23 9
324 15.26 temperature 30.0 270 < th dose independent rect. 23 9
326 15.26 humidity 50.0 270 > th dose independent rect. 23 9
328 15.26 atmosphere 995.0 270 > th dose independent rect. 23 9
330 15.26 temperature 10.0 270 > th dose independent rect. 8 15
344 15.27 precipitation 0.1 270 < th dose independent rect. 2 16
346 15.27 temperature 15.0 270 > th dose dependent rect. 15 1
350 15.27 precipitation 0.1 270 < th dose dependent rect. 2 16
351 15.28 wind 1.0 10 > th dose independent rect. 9 6
352 15.28 wind 9.0 10 < th dose independent rect. 9 6
354 15.28 precipitation 0.1 270 < th dose independent rect. 23 9
356 15.28 wind 9.0 270 < th dose independent rect. 8 15
363 15.28 precipitation 0.1 270 < th dose dependent rect. 23 9
367 15.29 temperature 10.0 1440 > th dose independent rect. 10 6
383 15.29 temperature 10.0 1440 > th dose independent rect. 16 18
398 15.30 humidity 50.0 10 > th dose independent rect. 9 6
399 15.30 wind 9.0 270 < th dose independent rect. 18 8
400 15.30 temperature 10.0 270 > th dose independent rect. 18 8
407 15.30 atmosphere 995.0 270 > th dose independent rect. 8 15
408 15.30 temperature 10.0 270 > th dose independent rect. 2 16
409 15.30 atmosphere 1015.0 270 < th dose independent rect. 2 16
410 15.30 atmosphere 1015.0 270 < th dose dependent rect. 15 1
415 15.31 radiation 1.0 10 > th dose independent rect. 9 6
416 15.31 radiation 1.0 90 > th dose independent rect. 8 7
441 15.32 temperature 10.0 270 > th dose independent rect. 13 18
442 15.32 temperature 30.0 270 > th dose independent rect. 18 23
443 15.32 temperature 30.0 270 < th dose independent rect. 10 23
453 15.33 atmosphere 995.0 270 > th dose independent rect. 18 8
461 15.34 temperature 30.0 270 > th dose independent sin 22 NA
473 15.34 atmosphere 1015.0 270 < th dose independent rect. 23 9
485 15.34 wind 1.0 90 > th dose independent rect. 15 17
501 15.34 temperature 25.0 10 > th dose dependent rect. 15 17
519 15.35 wind 9.0 270 < th dose independent rect. 13 18
536 15.35 humidity 90.0 10 < th dose dependent rect. 15 17
589 15.37 radiation 1.0 270 < th dose independent rect. 10 16
594 15.37 atmosphere 995.0 90 > th dose dependent rect. 8 7
621 15.38 wind 9.0 270 < th dose independent rect. 2 16
623 15.38 wind 1.0 270 > th dose independent rect. 13 17
625 15.38 atmosphere 995.0 90 > th dose independent rect. 15 17
641 15.38 atmosphere 995.0 10 > th dose dependent rect. 9 7
646 15.39 wind 1.0 270 > th dose independent rect. 13 4
666 15.39 humidity 90.0 270 < th dose dependent rect. 15 1
675 15.40 temperature 20.0 270 > th dose independent rect. 13 4
680 15.40 precipitation 0.1 270 < th dose independent rect. 18 8
702 15.40 precipitation 0.1 270 < th dose dependent rect. 18 8
707 15.41 radiation 1.0 270 > th dose independent sin 16 NA
727 15.42 temperature 30.0 270 > th dose independent no NA NA
730 15.42 precipitation 0.1 270 < th dose independent rect. 13 5
833 15.42 precipitation 0.1 270 < th dose dependent rect. 13 5
842 15.43 temperature 30.0 270 < th dose independent no NA NA
843 15.43 radiation 1.0 270 < th dose independent sin 15 NA
844 15.43 temperature 30.0 270 < th dose independent rect. 9 2
861 15.43 atmosphere 995.0 10 > th dose independent rect. 9 17
872 15.43 radiation 40.0 270 < th dose dependent rect. 23 9
904 15.44 wind 7.0 270 < th dose independent rect. 17 20
955 15.45 radiation 1.0 90 > th dose independent rect. 15 17
992 15.46 precipitation 0.1 270 < th dose independent rect. 8 15