BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0307200 Os08g0307200|Os08g0307200
         (116 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0307200                                                      207   1e-54
Os06g0496400                                                      107   1e-24

>Os08g0307200 
          Length = 116

 Score =  207 bits (527), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 104/116 (89%), Positives = 104/116 (89%)

Query: 1   MDMDMDAHATELQLIGHGLTATTXXXXXXXXXXXXDNGMVIVTTTPKSAAASGSQKRART 60
           MDMDMDAHATELQLIGHGLTATT            DNGMVIVTTTPKSAAASGSQKRART
Sbjct: 1   MDMDMDAHATELQLIGHGLTATTSSSSCFSSGGSGDNGMVIVTTTPKSAAASGSQKRART 60

Query: 61  PSSPSQGAELLEYSKKQRANNMETQSSTAKSQHERKEMRERISERKETRVPILLDL 116
           PSSPSQGAELLEYSKKQRANNMETQSSTAKSQHERKEMRERISERKETRVPILLDL
Sbjct: 61  PSSPSQGAELLEYSKKQRANNMETQSSTAKSQHERKEMRERISERKETRVPILLDL 116



>Os06g0496400 
          Length = 294

 Score =  107 bits (268), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/107 (60%), Positives = 72/107 (67%), Gaps = 8/107 (7%)

Query: 1   MDMDMDAHATELQLIGHGLTATTXXXXXXXXXXXXDNG-MVIVTTT-PKSAAASGSQKRA 58
           MDMDMDAH     LIG+G TA T             +  MV+VTTT P+SAAASGSQ+RA
Sbjct: 114 MDMDMDAHGAAPPLIGYGPTAATSSPSSCFSSGGSGDSGMVMVTTTTPRSAAASGSQRRA 173

Query: 59  RTPSSPSQGAELLEYSKKQRANNMETQSSTAKSQHERKEMRERISER 105
           R P SP QG+EL EYSKKQRANN ETQSS AKS+      RERISER
Sbjct: 174 RPPPSPLQGSELHEYSKKQRANNKETQSSAAKSR------RERISER 214



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.306    0.119    0.308 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,141,330
Number of extensions: 98720
Number of successful extensions: 706
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 704
Number of HSP's successfully gapped: 2
Length of query: 116
Length of database: 17,035,801
Length adjustment: 83
Effective length of query: 33
Effective length of database: 12,702,039
Effective search space: 419167287
Effective search space used: 419167287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 149 (62.0 bits)