Os08g0307200 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0307200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.22	(0.037)	R²	:	0.246
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	1.94	(0.159)	R²_dE	:	0.276	R²_E	:	0.218
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.282	(0.0816)	R²_dN8	:	0.0288	R²_N8	:	-0.0301
σ	:	0.687
deviance	:	217.27
__

_____

C
peak time of C	:	--
E
wheather	:	temperature
threshold	:	29.61
memory length	:	377
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
203.43	0.67	5.16	0.936	0.408	2.14	0.00259	-2.66	0.472	24	30.2	572	--	--
209.53	0.674	5.21	0.46	0.362	2.16	0.293	--	0.372	23.3	29.46	523	--	--
203.21	0.664	5.16	0.926	0.355	2.16	--	-2.66	0.481	23.5	30.1	521	--	--
209.88	0.675	5.21	0.448	0.357	2.16	--	--	0.372	23.3	29.4	521	--	--
206.43	0.669	5.15	0.863	--	2.1	--	-2.35	0.476	--	30.03	380	--	--
271.86	0.773	5.3	-0.118	0.547	--	-0.0628	--	-0.0749	4.51	--	--	--	--
271.87	0.772	5.3	-0.118	0.547	--	--	--	-0.0746	4.49	--	--	--	--
213.34	0.68	5.21	0.404	--	2.07	--	--	0.353	--	29.5	380	--	--
214.36	0.682	5.23	--	0.344	1.95	--	--	0.286	0.183	29.4	520	--	--
287.85	0.793	5.3	-0.0962	--	--	--	--	-0.0601	--	--	--	--	--
272.23	0.772	5.29	--	0.545	--	--	--	-0.0615	4.5	--	--	--	--
217.27	0.687	5.22	--	--	1.94	--	--	0.282	--	29.61	377	--	--
288.1	0.792	5.3	--	--	--	--	--	-0.0495	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	204.07	temperature	30	720	< th	dose dependent	rect.	19	21
11	204.70	temperature	30	270	< th	dose dependent	rect.	4	23
13	204.74	temperature	15	720	> th	dose dependent	rect.	20	22
23	205.06	temperature	30	720	< th	dose dependent	rect.	15	23
24	205.08	temperature	30	720	< th	dose dependent	rect.	13	23
38	205.41	temperature	30	720	< th	dose dependent	no	NA	NA
39	205.42	temperature	30	270	< th	dose dependent	rect.	2	23
44	205.55	temperature	10	270	> th	dose dependent	rect.	24	23
50	205.64	temperature	15	720	> th	dose dependent	rect.	14	23
51	205.67	temperature	15	720	> th	dose dependent	rect.	17	22
75	206.09	temperature	30	720	< th	dose dependent	rect.	7	23
77	206.12	temperature	10	720	> th	dose dependent	rect.	10	23
82	206.16	temperature	15	1440	> th	dose dependent	rect.	2	22
109	206.26	temperature	15	1440	> th	dose dependent	rect.	7	23
110	206.27	temperature	20	1440	> th	dose dependent	rect.	9	15
123	206.29	temperature	15	1440	> th	dose dependent	rect.	2	14
133	206.31	temperature	15	1440	> th	dose dependent	no	NA	NA
135	206.31	temperature	15	1440	> th	dose dependent	rect.	1	17
299	206.52	temperature	15	1440	> th	dose dependent	sin	3	NA
368	206.63	temperature	30	720	< th	dose dependent	rect.	9	23
404	206.69	temperature	20	1440	> th	dose dependent	sin	18	NA
439	206.77	temperature	20	1440	> th	dose dependent	rect.	13	11
622	207.21	temperature	30	1440	< th	dose dependent	rect.	3	21
811	207.55	temperature	20	1440	> th	dose dependent	rect.	20	1