BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0300300 Os08g0300300|AK066375
         (538 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0300300  Similar to C1C-Nt1 protein                          255   6e-68

>Os08g0300300 Similar to C1C-Nt1 protein
          Length = 538

 Score =  255 bits (651), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 148/251 (58%), Positives = 148/251 (58%)

Query: 288 PHRAHAPDHGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAGVPDGAGAVPQGLHGR 347
           PHRAHAPDHGAP                             QEAGVPDGAGAVPQGLHGR
Sbjct: 288 PHRAHAPDHGAPRVPGGRRAALLAGTGAVRPRAARAPAGTAQEAGVPDGAGAVPQGLHGR 347

Query: 348 EVRGAGLRQXXXXXXXXXXXXXXXXXXXXXXXXPAPLXXXXXXXXXXXXXXXXXXXXXXX 407
           EVRGAGLRQ                        PAPL                       
Sbjct: 348 EVRGAGLRQARVREAGHHRRRGAVAGGDGDVRRPAPLHQHVAVHGGGDHVAGQGARPLPR 407

Query: 408 XXXXXXXXXXQVLRQVAGGGDPDEXXXXXXXXXXXXXXXXXKPVEAAPVAEGRRRQEIPV 467
                     QVLRQVAGGGDPDE                 KPVEAAPVAEGRRRQEIPV
Sbjct: 408 GRPATPPRRAQVLRQVAGGGDPDEARLHAGAHPRAAPGAGGKPVEAAPVAEGRRRQEIPV 467

Query: 468 APRLASQRQRLIDRCRGVHYIDTRTYILAGQRGMMMMECLHINIRTYTLDWSLSFCEFCA 527
           APRLASQRQRLIDRCRGVHYIDTRTYILAGQRGMMMMECLHINIRTYTLDWSLSFCEFCA
Sbjct: 468 APRLASQRQRLIDRCRGVHYIDTRTYILAGQRGMMMMECLHINIRTYTLDWSLSFCEFCA 527

Query: 528 IITAPIPGGHE 538
           IITAPIPGGHE
Sbjct: 528 IITAPIPGGHE 538




 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/109 (70%), Positives = 77/109 (70%)

Query: 28  LPHDEGPARLQRDXXXXXXXXXXXXXXXVHPDXXXXXXXXXXXXXXXXXDSRGAVAAERD 87
           LPHDEGPARLQRD               VHPD                 DSRGAVAAERD
Sbjct: 28  LPHDEGPARLQRDQREGQRAQAASGGGGVHPDVVLRVRPAVAGAVPAVPDSRGAVAAERD 87

Query: 88  VPFAEPIPAVPLPGGALQRLGQPLPQHQRRRHPQPLLHGHQRRLPPGLH 136
           VPFAEPIPAVPLPGGALQRLGQPLPQHQRRRHPQPLLHGHQRRLPPGLH
Sbjct: 88  VPFAEPIPAVPLPGGALQRLGQPLPQHQRRRHPQPLLHGHQRRLPPGLH 136



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.141    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,453,782
Number of extensions: 368265
Number of successful extensions: 1020
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1016
Number of HSP's successfully gapped: 2
Length of query: 538
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 432
Effective length of database: 11,501,117
Effective search space: 4968482544
Effective search space used: 4968482544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)