Os08g0300300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to C1C-Nt1 protein.
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Os08g0300300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to C1C-Nt1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.96 | 0.508 | 7.72 | -1.26 | 0.576 | 2.26 | 1.95 | 0.0961 | -0.0345 | 16.9 | 20.12 | 742 | -- | -- |
| 116.85 | 0.503 | 7.71 | -1.28 | 0.642 | 2.21 | 1.92 | -- | -0.0175 | 16.8 | 20.35 | 776 | -- | -- |
| 124.12 | 0.519 | 7.68 | -0.979 | 0.299 | 2.37 | -- | 1.41 | 0.0292 | 18.4 | 19.7 | 557 | -- | -- |
| 125.48 | 0.522 | 7.71 | -1.24 | 0.315 | 2.41 | -- | -- | -0.0349 | 17.9 | 20.17 | 585 | -- | -- |
| 127.33 | 0.526 | 7.68 | -1.04 | -- | 2.54 | -- | 1.31 | -0.00609 | -- | 20.07 | 533 | -- | -- |
| 222.69 | 0.7 | 7.64 | -0.623 | 1.14 | -- | 2.18 | -- | 0.381 | 18.6 | -- | -- | -- | -- |
| 234.22 | 0.717 | 7.64 | -0.658 | 1.14 | -- | -- | -- | 0.386 | 18.9 | -- | -- | -- | -- |
| 128.19 | 0.527 | 7.71 | -1.3 | -- | 2.6 | -- | -- | -0.0805 | -- | 20.56 | 542 | -- | -- |
| 163.11 | 0.595 | 7.67 | -- | 0.38 | 2.04 | -- | -- | 0.157 | 19.2 | 21.1 | 529 | -- | -- |
| 302.75 | 0.813 | 7.61 | -0.683 | -- | -- | -- | -- | 0.364 | -- | -- | -- | -- | -- |
| 245.64 | 0.733 | 7.62 | -- | 1.15 | -- | -- | -- | 0.459 | 18.8 | -- | -- | -- | -- |
| 169 | 0.605 | 7.67 | -- | -- | 2.28 | -- | -- | 0.121 | -- | 21.36 | 527 | -- | -- |
| 315.05 | 0.828 | 7.6 | -- | -- | -- | -- | -- | 0.44 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.50 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 22 |
| 9 | 116.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 22 |
| 14 | 116.71 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 24 | 117.08 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 27 | 117.29 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 37 | 117.92 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 52 | 118.53 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 63 | 118.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 17 |
| 85 | 119.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 18 |
| 143 | 119.65 | temperature | 20 | 1440 | > th | dose dependent | sin | 19 | NA |
| 385 | 121.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 746 | 122.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 789 | 122.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 21 |
| 955 | 123.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 22 |