BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0289000 Os08g0289000|AK072238
         (298 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0289000  Conserved hypothetical protein                      403   e-113

>Os08g0289000 Conserved hypothetical protein
          Length = 298

 Score =  403 bits (1036), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/298 (74%), Positives = 222/298 (74%)

Query: 1   MDDAVETAAEILVSFQNRRLVRWPEWVPRPDEKGAAAEEKKLPGWKDRRKRTSKSKPPPA 60
           MDDAVETAAEILVSFQNRRLVRWPEWVPRPDEKGAAAEEKKLPGWKDRRKRTSKSKPPPA
Sbjct: 1   MDDAVETAAEILVSFQNRRLVRWPEWVPRPDEKGAAAEEKKLPGWKDRRKRTSKSKPPPA 60

Query: 61  ILVCGLELRDSGGEKXXXXXXXXXXXXRKKMLFKMKVKDEPTAARGPETPPEYGAGAGSG 120
           ILVCGLELRDSGGEK            RKKMLFKMKVKDEPTAARGPETPPEYGAGAGSG
Sbjct: 61  ILVCGLELRDSGGEKAASIPAPLPPPARKKMLFKMKVKDEPTAARGPETPPEYGAGAGSG 120

Query: 121 ANFSRDGVARPLPPRAVVKAEPTPAARMPESPPYYVXXXXXXXXXXXXDRRPRPRPVERA 180
           ANFSRDGVARPLPPRAVVKAEPTPAARMPESPPYYV            DRRPRPRPVERA
Sbjct: 121 ANFSRDGVARPLPPRAVVKAEPTPAARMPESPPYYVAAAGSAPSTAGGDRRPRPRPVERA 180

Query: 181 HVKTVLAAAKEAMEASSPETPLDYXXXXXXXXXXXXDESSRKRKXXXXXXXXXXXXXXXX 240
           HVKTVLAAAKEAMEASSPETPLDY            DESSRKRK                
Sbjct: 181 HVKTVLAAAKEAMEASSPETPLDYAATTGSGASSSGDESSRKRKAAPGAGGSGGASSSGD 240

Query: 241 XXXXXPEKRPCLVXXXXXXXXXXXXXXXXXXXDSMNRNDDGVLLFDLNECVDNCEDWS 298
                PEKRPCLV                   DSMNRNDDGVLLFDLNECVDNCEDWS
Sbjct: 241 EGCSSPEKRPCLVAGGGAQTAAAAKAEGEKFADSMNRNDDGVLLFDLNECVDNCEDWS 298



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.132    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,985,179
Number of extensions: 445573
Number of successful extensions: 1824
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1818
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 198
Effective length of database: 11,814,401
Effective search space: 2339251398
Effective search space used: 2339251398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 156 (64.7 bits)