Os08g0289000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0289000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.29 | 0.343 | 10.4 | -0.651 | 0.8 | 0.177 | -1.2 | -4.62 | -0.643 | 2.35 | 8.798 | 7 | -- | -- |
| 65.75 | 0.378 | 10.3 | -0.00271 | 0.839 | 0.182 | 0.0314 | -- | -0.475 | 2.35 | -20.59 | 3 | -- | -- |
| 56.86 | 0.354 | 10.3 | -0.444 | 0.822 | 0.223 | -- | -3.28 | -0.593 | 2.28 | 8.798 | 7 | -- | -- |
| 65.76 | 0.378 | 10.3 | -0.000699 | 0.838 | 0.176 | -- | -- | -0.473 | 2.34 | -9.268 | 3 | -- | -- |
| 83.52 | 0.426 | 10.3 | -0.248 | -- | -0.754 | -- | -3.38 | -0.45 | -- | 10.55 | 14 | -- | -- |
| 66.06 | 0.381 | 10.3 | 0.0339 | 0.788 | -- | 0.0103 | -- | -0.448 | 2.35 | -- | -- | -- | -- |
| 66.06 | 0.381 | 10.3 | 0.0336 | 0.788 | -- | -- | -- | -0.448 | 2.35 | -- | -- | -- | -- |
| 81.62 | 0.421 | 10.3 | 0.186 | -- | -0.897 | -- | -- | -0.341 | -- | 25 | 101 | -- | -- |
| 65.76 | 0.378 | 10.3 | -- | 0.838 | 0.176 | -- | -- | -0.473 | 2.34 | 1.135 | 3 | -- | -- |
| 102.84 | 0.474 | 10.3 | 0.0669 | -- | -- | -- | -- | -0.428 | -- | -- | -- | -- | -- |
| 66.09 | 0.38 | 10.3 | -- | 0.789 | -- | -- | -- | -0.452 | 2.35 | -- | -- | -- | -- |
| 82.56 | 0.423 | 10.3 | -- | -- | -0.883 | -- | -- | -0.392 | -- | 25.05 | 101 | -- | -- |
| 102.96 | 0.474 | 10.3 | -- | -- | -- | -- | -- | -0.436 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.39 | wind | 1 | 43200 | > th | dose independent | rect. | 13 | 12 |
| 2 | 49.40 | humidity | 60 | 43200 | > th | dose dependent | rect. | 2 | 13 |
| 3 | 49.43 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 14 |
| 6 | 49.48 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 7 | 49.51 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 8 | 49.53 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 9 | 49.54 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 8 |
| 10 | 49.54 | humidity | 90 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 14 | 49.58 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 17 | 49.64 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 30 | 49.65 | humidity | 60 | 43200 | > th | dose dependent | sin | 4 | NA |
| 41 | 49.76 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 10 |
| 44 | 49.80 | radiation | 10 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 47 | 49.81 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 4 |
| 48 | 49.81 | wind | 1 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 53 | 49.84 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 54 | 49.85 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 56 | 49.85 | humidity | 60 | 43200 | > th | dose dependent | rect. | 7 | 22 |
| 66 | 49.88 | humidity | 50 | 43200 | > th | dose dependent | rect. | 22 | 21 |
| 71 | 49.90 | temperature | 20 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 83 | 49.92 | temperature | 20 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 88 | 49.92 | humidity | 50 | 43200 | > th | dose dependent | rect. | 17 | 22 |
| 103 | 49.94 | temperature | 20 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 113 | 49.95 | temperature | 20 | 43200 | > th | dose independent | sin | 12 | NA |
| 124 | 49.95 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 170 | 49.98 | radiation | 10 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 185 | 49.99 | temperature | 20 | 43200 | < th | dose independent | sin | 12 | NA |
| 208 | 49.99 | humidity | 60 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 225 | 50.00 | temperature | 25 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 281 | 50.02 | humidity | 50 | 43200 | > th | dose dependent | no | NA | NA |
| 307 | 50.04 | radiation | 10 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 336 | 50.05 | temperature | 20 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 406 | 50.07 | temperature | 20 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 411 | 50.07 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 423 | 50.08 | temperature | 20 | 43200 | > th | dose independent | no | NA | NA |
| 444 | 50.08 | temperature | 20 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 448 | 50.08 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 457 | 50.08 | humidity | 50 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 459 | 50.09 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 508 | 50.11 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 4 |
| 622 | 50.15 | temperature | 20 | 43200 | < th | dose independent | no | NA | NA |
| 623 | 50.15 | temperature | 20 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 624 | 50.15 | temperature | 20 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 648 | 50.16 | temperature | 20 | 43200 | < th | dose independent | rect. | 24 | 22 |
| 650 | 50.16 | temperature | 20 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 655 | 50.16 | temperature | 30 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 665 | 50.17 | temperature | 20 | 43200 | > th | dose independent | rect. | 4 | 5 |
| 679 | 50.17 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 702 | 50.18 | temperature | 10 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 770 | 50.21 | temperature | 25 | 43200 | < th | dose dependent | sin | 0 | NA |
| 822 | 50.24 | temperature | 20 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 962 | 50.29 | temperature | 25 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 963 | 50.29 | temperature | 25 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 969 | 50.29 | wind | 1 | 43200 | < th | dose independent | rect. | 14 | 9 |