BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0288500 Os08g0288500|J013001M23
         (742 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0288500  D111/G-patch domain containing protein             1021   0.0  

>Os08g0288500 D111/G-patch domain containing protein
          Length = 742

 Score = 1021 bits (2640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/742 (73%), Positives = 545/742 (73%)

Query: 1   MAGGKRRHARSNXXXXXXXXXXXXXXXXXXXELPSFVSPXXXXXXXXXXXXXXXXXXXXX 60
           MAGGKRRHARSN                   ELPSFVSP                     
Sbjct: 1   MAGGKRRHARSNPTAGGPRHGAGAGRRRPVPELPSFVSPASVAAAFSSSSSGGRGRGGRG 60

Query: 61  XXXXXXXXXXXXXXXXXXXHAVPFSYAALRPSASFEGATQVLDVTIDTAPCADPASASVP 120
                              HAVPFSYAALRPSASFEGATQVLDVTIDTAPCADPASASVP
Sbjct: 61  GRRGGGGGGSSNSASDSSSHAVPFSYAALRPSASFEGATQVLDVTIDTAPCADPASASVP 120

Query: 121 VYSYGPVGGIXXXXXXXXXXXXXXXXXXXXXXXXXXRGCSNXXXXXXXXXXXXPXXXXXX 180
           VYSYGPVGGI                          RGCSN            P      
Sbjct: 121 VYSYGPVGGIGLGFHGEEEDEEEEAGEAGLHLGLGFRGCSNEEVELEEATLVTPRKPKEK 180

Query: 181 XXXXXXXXFLSIGGIRIYTEDIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
                   FLSIGGIRIYTEDI                                      
Sbjct: 181 PKGKRNEGFLSIGGIRIYTEDISSPESGVGDSDEESESDYEGRDGNDDGDSDEEGSDVNE 240

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXVDDEVVADYMEGIGGSEELLSSKWVAGMNLVXXXXX 300
                                   VDDEVVADYMEGIGGSEELLSSKWVAGMNLV     
Sbjct: 241 GGSESDEELSGSDSEEDLSIGDSSVDDEVVADYMEGIGGSEELLSSKWVAGMNLVDSDDD 300

Query: 301 XXXXXXXXXXGFLKKVKGQLEGYALMNASEQYGMKRPSSADRLKGKGTAVRACDRDLASM 360
                     GFLKKVKGQLEGYALMNASEQYGMKRPSSADRLKGKGTAVRACDRDLASM
Sbjct: 301 DEMDTDEDEDGFLKKVKGQLEGYALMNASEQYGMKRPSSADRLKGKGTAVRACDRDLASM 360

Query: 361 RVMGLDAVMMVKDVRMANRLRKGAKVASSSSHLSRSWPNEGRKSKKYQSVPGEKKKHRKE 420
           RVMGLDAVMMVKDVRMANRLRKGAKVASSSSHLSRSWPNEGRKSKKYQSVPGEKKKHRKE
Sbjct: 361 RVMGLDAVMMVKDVRMANRLRKGAKVASSSSHLSRSWPNEGRKSKKYQSVPGEKKKHRKE 420

Query: 421 LIAKKRRQRMLGRGVDLDQINTKLRKMVVDQVDMVCFQPMHTRDCSQVQRLASIYHLKSG 480
           LIAKKRRQRMLGRGVDLDQINTKLRKMVVDQVDMVCFQPMHTRDCSQVQRLASIYHLKSG
Sbjct: 421 LIAKKRRQRMLGRGVDLDQINTKLRKMVVDQVDMVCFQPMHTRDCSQVQRLASIYHLKSG 480

Query: 481 CQGSGKKRFVTVTLTADSSLPSSEGQIRLEKLLGTEPEDFTVNWENSKRPAQVKGLSAPG 540
           CQGSGKKRFVTVTLTADSSLPSSEGQIRLEKLLGTEPEDFTVNWENSKRPAQVKGLSAPG
Sbjct: 481 CQGSGKKRFVTVTLTADSSLPSSEGQIRLEKLLGTEPEDFTVNWENSKRPAQVKGLSAPG 540

Query: 541 KLARNQTXXXXXXXXXQVSFAERPVSFVSCGTMAESVTETIAVATTSGEVSCEKIVESDS 600
           KLARNQT         QVSFAERPVSFVSCGTMAESVTETIAVATTSGEVSCEKIVESDS
Sbjct: 541 KLARNQTSSGKKSSKKQVSFAERPVSFVSCGTMAESVTETIAVATTSGEVSCEKIVESDS 600

Query: 601 VKLGTFEMHTKGFGSKMMAKMGFIEGTGLGKDGQGMMQPIQPIQRPKSLGLGVEFDSEAE 660
           VKLGTFEMHTKGFGSKMMAKMGFIEGTGLGKDGQGMMQPIQPIQRPKSLGLGVEFDSEAE
Sbjct: 601 VKLGTFEMHTKGFGSKMMAKMGFIEGTGLGKDGQGMMQPIQPIQRPKSLGLGVEFDSEAE 660

Query: 661 AIKARSEPPTKARSEPWRNLRKVEIGGVGSFERHTKGFGSKMMARMGFVEGSGLGKDGQG 720
           AIKARSEPPTKARSEPWRNLRKVEIGGVGSFERHTKGFGSKMMARMGFVEGSGLGKDGQG
Sbjct: 661 AIKARSEPPTKARSEPWRNLRKVEIGGVGSFERHTKGFGSKMMARMGFVEGSGLGKDGQG 720

Query: 721 IVNPLTAVRRPKSMGLGAKNKY 742
           IVNPLTAVRRPKSMGLGAKNKY
Sbjct: 721 IVNPLTAVRRPKSMGLGAKNKY 742



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,336,732
Number of extensions: 675401
Number of successful extensions: 1868
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1865
Number of HSP's successfully gapped: 2
Length of query: 742
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 634
Effective length of database: 11,396,689
Effective search space: 7225500826
Effective search space used: 7225500826
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)