BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0282500 Os08g0282500|AK112074
         (457 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0282500  Nitrous oxide reductase, N-terminal domain con...   741   0.0  
Os08g0285200  WD40-like domain containing protein                 498   e-141

>Os08g0282500 Nitrous oxide reductase, N-terminal domain containing protein
          Length = 457

 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/457 (81%), Positives = 372/457 (81%)

Query: 1   MASPPDAALTDYERLREENIRRNDAILASLRRKASELXXXXXXXXXXXXXXXXXXXXXXX 60
           MASPPDAALTDYERLREENIRRNDAILASLRRKASEL                       
Sbjct: 1   MASPPDAALTDYERLREENIRRNDAILASLRRKASELSAAIQSSSSSKRPKKQPPPPRAT 60

Query: 61  XXXVVLRRSLRTRGLXXXXXXXXXXXXXXXXXXXXXXXXCSTRXXXXXXXXXXXXXXXXX 120
              VVLRRSLRTRGL                        CSTR                 
Sbjct: 61  PIPVVLRRSLRTRGLPPSTSTSSSSAASPPAPESPPEAPCSTRLSSSLASAILAAASASP 120

Query: 121 XXXXXVRDDGFDAGAELVLRPSHVRRVVPDRILSVRVLPLVDRTVVAAGNKLGNVGFWXX 180
                VRDDGFDAGAELVLRPSHVRRVVPDRILSVRVLPLVDRTVVAAGNKLGNVGFW  
Sbjct: 121 AAPPPVRDDGFDAGAELVLRPSHVRRVVPDRILSVRVLPLVDRTVVAAGNKLGNVGFWDV 180

Query: 181 XXXXXXXXXXXFEYLPHRGPVGAIVSHPATPQKIYSCCYEGEICLMDLEKENFNMIYLTD 240
                      FEYLPHRGPVGAIVSHPATPQKIYSCCYEGEICLMDLEKENFNMIYLTD
Sbjct: 181 DGGAVAGADGVFEYLPHRGPVGAIVSHPATPQKIYSCCYEGEICLMDLEKENFNMIYLTD 240

Query: 241 YPIFSLCQAPNSPSSLYLAEGNDLKLFDERMGKVSATWNLHDNRINSIDFHPENTYMLAT 300
           YPIFSLCQAPNSPSSLYLAEGNDLKLFDERMGKVSATWNLHDNRINSIDFHPENTYMLAT
Sbjct: 241 YPIFSLCQAPNSPSSLYLAEGNDLKLFDERMGKVSATWNLHDNRINSIDFHPENTYMLAT 300

Query: 301 SSTDGTACMWDLRNMKEKEPESLKVLEHGRSVQSAYFSPSGRMVATTSLDDTVRIFSVDD 360
           SSTDGTACMWDLRNMKEKEPESLKVLEHGRSVQSAYFSPSGRMVATTSLDDTVRIFSVDD
Sbjct: 301 SSTDGTACMWDLRNMKEKEPESLKVLEHGRSVQSAYFSPSGRMVATTSLDDTVRIFSVDD 360

Query: 361 FGNSSIMKHNNKTGRWLSTFKAIWGWNDTDLFIGNMARAIDIILVDLNGSSLLAMNNARL 420
           FGNSSIMKHNNKTGRWLSTFKAIWGWNDTDLFIGNMARAIDIILVDLNGSSLLAMNNARL
Sbjct: 361 FGNSSIMKHNNKTGRWLSTFKAIWGWNDTDLFIGNMARAIDIILVDLNGSSLLAMNNARL 420

Query: 421 ESEHMTAIPGRFSAHPYKVGHLACASSGGKVFLWTRA 457
           ESEHMTAIPGRFSAHPYKVGHLACASSGGKVFLWTRA
Sbjct: 421 ESEHMTAIPGRFSAHPYKVGHLACASSGGKVFLWTRA 457



>Os08g0285200 WD40-like domain containing protein
          Length = 488

 Score =  498 bits (1281), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 270/463 (58%), Positives = 304/463 (65%), Gaps = 20/463 (4%)

Query: 1   MASPPD-----AALTDYERLREENIRRNDAILASLRRKASELXXXXXXXXXXXXXXXXXX 55
           MASPP+       LTDYER R ENIRRN  IL SLRRKA+EL                  
Sbjct: 40  MASPPEPEPDAGGLTDYERRRAENIRRNGVILDSLRRKAAELSAIIQLSRPPTKKQQPRA 99

Query: 56  XXXXXXXXVVLRRSLRTRGLXXXXXXXXXXXXXXXXXXXXXXXXCSTRXXXXXXXXXXXX 115
                   V    SLRT+GL                         STR            
Sbjct: 100 RPRAAPAVVRR--SLRTQGLPPPPASGPAPAPPRR----------STRITPSLASAILDA 147

Query: 116 XXXXXXXXXXVRDDGFDAGAELVLRPSHVRRVV-PDRILSVRVLPLVDRTVVAAGNKLGN 174
                     VRDDGFDA  ELVLRPS+VRR+V  DRI S+R+LPLVDRTVVAAG+ +G+
Sbjct: 148 TSPPASEAK-VRDDGFDARTELVLRPSNVRRLVSADRIPSLRILPLVDRTVVAAGSNVGH 206

Query: 175 VGFWXXXXXXXXXXXXXFEYLPHRGPVGAIVSHPATPQKIYSCCYEGEICLMDLEKENFN 234
           VGFW             FEY+PH   VGAIV+H A P KIYSC + GEICLMDLE+ENFN
Sbjct: 207 VGFWVVDDDGDDAHRV-FEYMPHLSSVGAIVAHAAKPHKIYSCSHGGEICLMDLERENFN 265

Query: 235 MIYLTDYPIFSLCQAPNSPSSLYLAEGNDLKLFDERMGKVSATWNLHDNRINSIDFHPEN 294
           +  L+++PI SLCQAPNSPS LY  E  D+KLFD+R+GKVS +WN H +RINSIDFHPEN
Sbjct: 266 ITRLSEFPILSLCQAPNSPSCLYFGEETDVKLFDDRIGKVSTSWNAHASRINSIDFHPEN 325

Query: 295 TYMLATSSTDGTACMWDLRNMKEKEPESLKVLEHGRSVQSAYFSPSGRMVATTSLDDTVR 354
           TYMLATSS DGTACMWDLR MK+K  ESL VLEH R +QSAYFSPSG MVATTSLD  VR
Sbjct: 326 TYMLATSSRDGTACMWDLRTMKKKGAESLVVLEHDRGLQSAYFSPSGHMVATTSLDGIVR 385

Query: 355 IFSVDDFGNSSIMKHNNKTGRWLSTFKAIWGWNDTDLFIGNMARAIDIILVDLNGSSLLA 414
           +FSVD+F N   ++ NN  G  LSTFKAIWGWND DLFIGN  RAID+I VDLN SS+  
Sbjct: 386 VFSVDNFENFHTVERNNNIGTHLSTFKAIWGWNDMDLFIGNATRAIDVISVDLNDSSIST 445

Query: 415 MNNARLESEHMTAIPGRFSAHPYKVGHLACASSGGKVFLWTRA 457
            NNA L+SEHM +IP RFSAHP KVGHLAC+SS GKVFLWTRA
Sbjct: 446 TNNACLKSEHMVSIPYRFSAHPCKVGHLACSSSSGKVFLWTRA 488



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,999,316
Number of extensions: 477227
Number of successful extensions: 1293
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1294
Number of HSP's successfully gapped: 2
Length of query: 457
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 353
Effective length of database: 11,605,545
Effective search space: 4096757385
Effective search space used: 4096757385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)