Os08g0282500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nitrous oxide reductase, N-terminal domain containing protein.
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Os08g0282500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nitrous oxide reductase, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.63 | 0.565 | 4.78 | 1.02 | 2.62 | 2.21 | 1.12 | -1.22 | 0.264 | 19.3 | 25.81 | 148 | -- | -- |
| 145.05 | 0.561 | 4.77 | 1.14 | 2.63 | 2.11 | 1.04 | -- | 0.288 | 19.3 | 25.8 | 143 | -- | -- |
| 147.88 | 0.566 | 4.77 | 1.03 | 2.62 | 2.23 | -- | -0.77 | 0.281 | 19.3 | 25.9 | 148 | -- | -- |
| 148.02 | 0.567 | 4.77 | 1.11 | 2.62 | 2.15 | -- | -- | 0.296 | 19.3 | 25.82 | 149 | -- | -- |
| 343.35 | 0.863 | 4.83 | 0.157 | -- | 4.16 | -- | -4.19 | -0.139 | -- | 24.74 | 414 | -- | -- |
| 213.83 | 0.686 | 4.76 | 1.47 | 3.24 | -- | 1.85 | -- | 0.381 | 18.6 | -- | -- | -- | -- |
| 222.42 | 0.698 | 4.75 | 1.44 | 3.24 | -- | -- | -- | 0.387 | 18.6 | -- | -- | -- | -- |
| 349.5 | 0.871 | 4.77 | 0.732 | -- | 3.81 | -- | -- | -0.0143 | -- | 24.6 | 409 | -- | -- |
| 179.47 | 0.624 | 4.8 | -- | 2.44 | 2.4 | -- | -- | 0.145 | 19.4 | 25.57 | 197 | -- | -- |
| 770.64 | 1.3 | 4.69 | 1.36 | -- | -- | -- | -- | 0.321 | -- | -- | -- | -- | -- |
| 277.31 | 0.779 | 4.79 | -- | 3.23 | -- | -- | -- | 0.226 | 18.6 | -- | -- | -- | -- |
| 363.18 | 0.888 | 4.78 | -- | -- | 3.92 | -- | -- | -0.0998 | -- | 24.56 | 414 | -- | -- |
| 819.75 | 1.34 | 4.72 | -- | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 141.08 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 4 | 143.58 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 7 | 143.82 | temperature | 25 | 90 | > th | dose dependent | sin | 21 | NA |
| 8 | 143.86 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 13 |
| 19 | 145.65 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 26 | 145.92 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 16 |
| 28 | 145.97 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 20 |
| 54 | 146.92 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 216 | 148.43 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 346 | 151.52 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 23 |
| 358 | 151.76 | temperature | 25 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 369 | 152.16 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 381 | 152.36 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 420 | 152.69 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 14 |
| 453 | 153.20 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 22 |
| 495 | 153.64 | temperature | 25 | 720 | > th | dose dependent | sin | 7 | NA |
| 496 | 153.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 14 |
| 644 | 155.54 | temperature | 30 | 270 | > th | dose independent | sin | 2 | NA |
| 697 | 156.34 | temperature | 30 | 270 | < th | dose independent | sin | 1 | NA |
| 721 | 156.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 749 | 157.47 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 23 |
| 782 | 157.99 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 7 |
| 801 | 158.27 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 827 | 158.89 | temperature | 30 | 270 | > th | dose independent | rect. | 8 | 9 |
| 845 | 158.96 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 15 |
| 859 | 159.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 874 | 159.23 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 949 | 159.89 | temperature | 30 | 30 | < th | dose dependent | rect. | 8 | 15 |