BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0270800 Os08g0270800|AK066874
         (227 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0270800  Conserved hypothetical protein                      296   8e-81

>Os08g0270800 Conserved hypothetical protein
          Length = 227

 Score =  296 bits (758), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 146/183 (79%), Positives = 146/183 (79%)

Query: 45  KYKNLLQDYXXXXXXXXXXXXXXXXXXXXXXXXXAEVKFLRKRYKSMSENPSQTFVYRVK 104
           KYKNLLQDY                         AEVKFLRKRYKSMSENPSQTFVYRVK
Sbjct: 45  KYKNLLQDYKELLEETEAKKKRLQMEKLKKQRLLAEVKFLRKRYKSMSENPSQTFVYRVK 104

Query: 105 NPALPPTLRQPGWSHGEEYHTVRAIGSSSKGPSAHRRLNAAPRASPVIDLNXXXXXXXXX 164
           NPALPPTLRQPGWSHGEEYHTVRAIGSSSKGPSAHRRLNAAPRASPVIDLN         
Sbjct: 105 NPALPPTLRQPGWSHGEEYHTVRAIGSSSKGPSAHRRLNAAPRASPVIDLNEACEPSSEE 164

Query: 165 XXXLHGYQEPVRVGRVMRYPMEGDFAAGPSDAKMAAFWDVRNAASSRAGKRKISWQDQLA 224
              LHGYQEPVRVGRVMRYPMEGDFAAGPSDAKMAAFWDVRNAASSRAGKRKISWQDQLA
Sbjct: 165 MEELHGYQEPVRVGRVMRYPMEGDFAAGPSDAKMAAFWDVRNAASSRAGKRKISWQDQLA 224

Query: 225 LRV 227
           LRV
Sbjct: 225 LRV 227



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.130    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,302,489
Number of extensions: 190401
Number of successful extensions: 553
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 130
Effective length of database: 11,971,043
Effective search space: 1556235590
Effective search space used: 1556235590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)