Os08g0270800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0270800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.15 | 0.271 | 11.9 | -0.191 | 0.55 | -0.898 | 0.064 | 0.164 | 0.0653 | 6.13 | 10.79 | 252 | -- | -- |
| 33.22 | 0.268 | 11.9 | -0.19 | 0.552 | -0.898 | 0.0267 | -- | 0.0622 | 6.17 | 10.82 | 249 | -- | -- |
| 33.13 | 0.268 | 11.9 | -0.192 | 0.556 | -0.895 | -- | 0.154 | 0.0647 | 6.12 | 10.83 | 249 | -- | -- |
| 33.22 | 0.268 | 11.9 | -0.195 | 0.557 | -0.891 | -- | -- | 0.0615 | 6.12 | 10.83 | 249 | -- | -- |
| 39.94 | 0.294 | 11.9 | -0.0286 | -- | -1.17 | -- | 0.291 | 0.167 | -- | 10 | 349 | -- | -- |
| 48.19 | 0.325 | 11.9 | -0.34 | 1.2 | -- | 0.0346 | -- | -0.0207 | 3.75 | -- | -- | -- | -- |
| 48.19 | 0.325 | 11.9 | -0.34 | 1.2 | -- | -- | -- | -0.0209 | 3.75 | -- | -- | -- | -- |
| 38.57 | 0.289 | 11.9 | -0.15 | -- | -1.28 | -- | -- | 0.14 | -- | 10.1 | 393 | -- | -- |
| 34.22 | 0.272 | 11.9 | -- | 0.551 | -0.903 | -- | -- | 0.0826 | 6.18 | 10.82 | 250 | -- | -- |
| 127.65 | 0.528 | 11.9 | -0.29 | -- | -- | -- | -- | 0.011 | -- | -- | -- | -- | -- |
| 51.24 | 0.335 | 11.9 | -- | 1.19 | -- | -- | -- | 0.017 | 3.75 | -- | -- | -- | -- |
| 39.06 | 0.291 | 11.9 | -- | -- | -1.28 | -- | -- | 0.149 | -- | 10 | 393 | -- | -- |
| 129.87 | 0.532 | 11.9 | -- | -- | -- | -- | -- | 0.0432 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.10 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 4 | 16 |
| 2 | 26.26 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 16 |
| 3 | 26.33 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 11 | 26.82 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 8 |
| 23 | 27.49 | radiation | 10.0 | 270 | < th | dose independent | rect. | 4 | 16 |
| 55 | 28.30 | radiation | 10.0 | 270 | < th | dose dependent | sin | 23 | NA |
| 60 | 28.35 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 18 |
| 73 | 28.67 | radiation | 10.0 | 90 | < th | dose dependent | sin | 20 | NA |
| 83 | 28.99 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 97 | 29.29 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 109 | 29.49 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 16 |
| 164 | 30.07 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 17 |
| 193 | 30.34 | humidity | 70.0 | 270 | > th | dose independent | rect. | 3 | 17 |
| 205 | 30.45 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 16 |
| 209 | 30.52 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 214 | 30.58 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 17 |
| 234 | 30.76 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 16 |
| 241 | 30.80 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 251 | 30.87 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 8 |
| 273 | 31.04 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 8 | 19 |
| 274 | 31.05 | radiation | 10.0 | 270 | > th | dose independent | sin | 23 | NA |
| 279 | 31.08 | radiation | 10.0 | 270 | < th | dose independent | sin | 23 | NA |
| 294 | 31.16 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 16 |
| 305 | 31.26 | radiation | 20.0 | 270 | < th | dose independent | rect. | 13 | 8 |
| 316 | 31.29 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 15 |
| 343 | 31.46 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 18 |
| 348 | 31.49 | radiation | 10.0 | 270 | > th | dose independent | rect. | 8 | 23 |
| 364 | 31.62 | radiation | 10.0 | 270 | > th | dose independent | rect. | 8 | 10 |
| 390 | 31.69 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 21 |
| 407 | 31.77 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 20 | 8 |
| 453 | 31.97 | radiation | 10.0 | 90 | < th | dose independent | sin | 19 | NA |
| 467 | 32.01 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 15 |
| 480 | 32.06 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 18 |
| 516 | 32.16 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 6 |
| 540 | 32.23 | radiation | 1.0 | 90 | > th | dose independent | sin | 20 | NA |
| 552 | 32.27 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 9 |
| 577 | 32.34 | temperature | 30.0 | 270 | < th | dose independent | rect. | 15 | 6 |
| 608 | 32.44 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 16 |
| 615 | 32.45 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 21 | 18 |
| 623 | 32.48 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 8 | 9 |
| 625 | 32.49 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 8 |
| 673 | 32.54 | radiation | 1.0 | 270 | > th | dose dependent | sin | 23 | NA |
| 711 | 32.65 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 7 |
| 715 | 32.66 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 718 | 32.67 | temperature | 10.0 | 270 | > th | dose independent | rect. | 20 | 8 |
| 719 | 32.67 | temperature | 30.0 | 270 | < th | dose independent | rect. | 20 | 8 |
| 720 | 32.67 | humidity | 50.0 | 270 | > th | dose independent | rect. | 20 | 8 |
| 723 | 32.67 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 20 | 8 |
| 724 | 32.67 | radiation | 1.0 | 270 | < th | dose independent | rect. | 20 | 8 |
| 729 | 32.67 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 16 |
| 730 | 32.67 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 16 |
| 733 | 32.67 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 20 | 8 |
| 742 | 32.69 | wind | 9.0 | 270 | < th | dose independent | rect. | 20 | 8 |
| 850 | 32.83 | wind | 7.0 | 270 | < th | dose independent | rect. | 10 | 17 |
| 856 | 32.84 | temperature | 25.0 | 10 | > th | dose dependent | sin | 21 | NA |
| 863 | 32.86 | temperature | 25.0 | 90 | > th | dose dependent | sin | 23 | NA |
| 880 | 32.90 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 8 |
| 884 | 32.90 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 8 |
| 966 | 33.04 | radiation | 10.0 | 270 | > th | dose independent | rect. | 17 | 23 |