BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0256700 Os08g0256700|AK108811
(259 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0256700 Conserved hypothetical protein 465 e-131
Os08g0257100 235 2e-62
Os08g0403600 94 9e-20
Os08g0404900 69 3e-12
Os08g0404500 C1-like domain containing protein 65 6e-11
>Os08g0256700 Conserved hypothetical protein
Length = 259
Score = 465 bits (1196), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/259 (89%), Positives = 231/259 (89%)
Query: 1 MVSSSFPAEIIHPARLGCMLRLHVVEHPTGDAAAVAFQCDGCMLPGEGTRYTSVVDNHPT 60
MVSSSFPAEIIHPARLGCMLRLHVVEHPTGDAAAVAFQCDGCMLPGEGTRYTSVVDNHPT
Sbjct: 1 MVSSSFPAEIIHPARLGCMLRLHVVEHPTGDAAAVAFQCDGCMLPGEGTRYTSVVDNHPT 60
Query: 61 HLALHTSCALATPTLQHALVKGTMELRHEAPAGGAGVCSACFETVRGFHYYGSRKTGKGE 120
HLALHTSCALATPTLQHALVKGTMELRHEAPAGGAGVCSACFETVRGFHYYGSRKTGKGE
Sbjct: 61 HLALHTSCALATPTLQHALVKGTMELRHEAPAGGAGVCSACFETVRGFHYYGSRKTGKGE 120
Query: 121 HPKLHPCCARLPVSIAVRGGLTFELRAEVSHRCTGCRAMEWYYRPWCYRSTNSPDHRVYL 180
HPKLHPCCARLPVSIAVRGGLTFELRAEVSHRCTGCRAMEWYYRPWCYRSTNSPDHRVYL
Sbjct: 121 HPKLHPCCARLPVSIAVRGGLTFELRAEVSHRCTGCRAMEWYYRPWCYRSTNSPDHRVYL 180
Query: 181 HVKCIREIMESPXXXXXXXXXDEDDRVVARLLERADQSSKLEXXXXXXXXXXXXXXXXXX 240
HVKCIREIMESP DEDDRVVARLLERADQSSKLE
Sbjct: 181 HVKCIREIMESPGGGGGGGAGDEDDRVVARLLERADQSSKLERRVCKILVILVRVVVRML 240
Query: 241 XGDPTALLTEGVSAIVSPW 259
GDPTALLTEGVSAIVSPW
Sbjct: 241 IGDPTALLTEGVSAIVSPW 259
>Os08g0257100
Length = 232
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 131/250 (52%), Positives = 159/250 (63%), Gaps = 26/250 (10%)
Query: 9 EIIHPARLGCMLRLHVVEHPTGDAAAVAFQCDGCMLPGEGTRYTSVVDNHPTHLALHTSC 68
E+ HPAR GCML LH GDA A+AFQC GCM G+G RYTS +H LHT C
Sbjct: 4 EVRHPARPGCMLTLH------GDADAMAFQCTGCMETGKGPRYTS--GDH----VLHTYC 51
Query: 69 ALATPTLQHALVKGTMELRHEAPAGGAGV-CSACFETVRGFHYYGSRKTGKGEHPKLHPC 127
ALATPTLQH LV+G MELR AP GG V C AC++ VRGFHY+ S LHP
Sbjct: 52 ALATPTLQHPLVEGIMELRLVAPTGGDAVRCDACYDAVRGFHYHSSTSG-----VDLHPG 106
Query: 128 CARLPVSIAVRGGLTFELRAEVSHRCTGCRAMEWYYRPWCYRSTNSPDHRVYLHVKCIRE 187
CA++P SI +RGG F+LR EVSHRCT C+AME +YRPW YRS N+PD R+YLHVKCI+E
Sbjct: 107 CAKMPRSITLRGGTIFDLRTEVSHRCTSCKAMEGFYRPWFYRSENNPDQRMYLHVKCIKE 166
Query: 188 IMESPXXXXXXXXXDEDDRVVARLLERADQSSKLEXXXXXXXXXXXXXXXXXXXGDPTAL 247
I ++ D++ R++ RL ERA ++ +LE GDPT +
Sbjct: 167 IQDA--------GDDDEVRMMVRLQERAGRNVRLERRVCKTLVIMVRIVFRLLIGDPTPI 218
Query: 248 LTEGVSAIVS 257
LTEGV+AIVS
Sbjct: 219 LTEGVNAIVS 228
>Os08g0403600
Length = 275
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 82/166 (49%), Gaps = 18/166 (10%)
Query: 37 FQCDGCMLPGEGTRYTSVVDNHPTHLALHTSCALATPTLQHALVKG-TMELRHEAP---- 91
F+CDGCM G+G RY + + LHT CALA T +H L G T L E P
Sbjct: 34 FKCDGCMEHGDGPRYR--CERETCNFDLHTCCALAPATREHRLFPGCTFVLLPEPPPPTA 91
Query: 92 AGGAGVCSACFETV--RGFHYYGSRKTGKGEHPKLHPCCARLPVSIAVRGGLTFELRAEV 149
AG +C AC E V RG Y+ S + G LHP CA LP AV GG FELR E
Sbjct: 92 AGERRICDACGEGVHARGLVYHCSGRGDGGLGLDLHPTCASLPARFAVGGGRVFELRKEA 151
Query: 150 SHRCTGCRAME-------WYYRPWCYRSTNSPDHRVYLHVKCIREI 188
S RC C M W+YR + Y + +YLHV C++ +
Sbjct: 152 SRRCAECGEMRCGGGRRFWFYRSYSY--ADGDGEALYLHVACLKRM 195
>Os08g0404900
Length = 286
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 89/204 (43%), Gaps = 36/204 (17%)
Query: 7 PAEII-HPARLGCMLRLHVVEHPTGDAAAVAFQCDGCM-LPGEG-TRYTSVVDNHPTHLA 63
PAEI HP L+L + DA A F CDGC L G G RY +
Sbjct: 12 PAEIRGHPFHPAHKLKLITAD----DAGAGRFVCDGCKELGGAGCARYE--CEEAGCDFD 65
Query: 64 LHTSCALATPTL--QHALVKG---TMELRHEAPA------GGAGVCSACFETVRGFHYYG 112
LH CALA L AL KG + L HE P G VC AC + VRGF Y+
Sbjct: 66 LHAPCALAPDVLPAGRALFKGGAASFVLLHEPPPTAAPDDGDVRVCDACGDDVRGFVYHC 125
Query: 113 SRKTGKGEHPKLHPCCARLPVSIAVRGGLTFELRA--EVSHRCTGCRAMEWYYRP----- 165
+ LHPCCA LP +A+ GG FEL + RC C E RP
Sbjct: 126 FDRD-----LDLHPCCAHLPGRVAL-GGAAFELSSGGTAPRRCLLC--TEEGSRPHLRRN 177
Query: 166 -WCYRSTNSPDHRVYLHVKCIREI 188
W Y S + V+LHV C++ +
Sbjct: 178 YWTYSSDDLDGEAVHLHVACVKRM 201
>Os08g0404500 C1-like domain containing protein
Length = 269
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/177 (35%), Positives = 78/177 (44%), Gaps = 36/177 (20%)
Query: 33 AAVAFQCDGCMLPG-EGTRYTSVVDNHPTHLALHTSCALATPTLQHALV-KG---TMELR 87
A F+CDGC PG +G RY P + LHT CAL TLQH L+ KG T
Sbjct: 27 AGAPFRCDGCQEPGGDGPRYRCA----PCNFDLHTDCALPPATLQHPLLFKGGGCTFVFL 82
Query: 88 HE--APAGGAGVCSACFETVRGFHYYGSRKTGKGEHPKLHPCCARLPVSIAVRGGL---- 141
E APA + C AC + VRGF ++ + + LHPCCA L I GG
Sbjct: 83 REPPAPAAASRQCDACGDDVRGFVFHCADR-----DLDLHPCCASLEDRIVTGGGGDGDG 137
Query: 142 -TFELRAEV-----SHRCTGC----RAMEWYYRPWCYRSTNSPDHRVYLHVKCIREI 188
FEL RC C R W+YR V++HV C++E+
Sbjct: 138 RVFELTKAASSSSSRRRCGVCGDKSRRTFWFYR------GRFDGEDVFIHVACVKEL 188
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,153,310
Number of extensions: 389876
Number of successful extensions: 716
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 703
Number of HSP's successfully gapped: 6
Length of query: 259
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 160
Effective length of database: 11,866,615
Effective search space: 1898658400
Effective search space used: 1898658400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)