BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0247000 Os08g0247000|Os08g0247000
         (204 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0247000  Conserved hypothetical protein                      320   4e-88

>Os08g0247000 Conserved hypothetical protein
          Length = 204

 Score =  320 bits (821), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 158/204 (77%), Positives = 158/204 (77%)

Query: 1   MKQAQLHRCNTPVQGCYSHPMPINVIRYLKTKSNIRQQAAATVXXXXXXXXXXRMVLVXX 60
           MKQAQLHRCNTPVQGCYSHPMPINVIRYLKTKSNIRQQAAATV          RMVLV  
Sbjct: 1   MKQAQLHRCNTPVQGCYSHPMPINVIRYLKTKSNIRQQAAATVSSSSNPSSSSRMVLVAA 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXIKSETIEGAAAGTHREEAKRKGNTDFVMDDDGCGLPL 120
                                  IKSETIEGAAAGTHREEAKRKGNTDFVMDDDGCGLPL
Sbjct: 61  AASKNQTAAATASRRSQQPQQQAIKSETIEGAAAGTHREEAKRKGNTDFVMDDDGCGLPL 120

Query: 121 WPWWRCKDXXXXXXXXXXXQTAGAICERDAGSTYRDSCSEHVVILQLAYTDVAVLALVSM 180
           WPWWRCKD           QTAGAICERDAGSTYRDSCSEHVVILQLAYTDVAVLALVSM
Sbjct: 121 WPWWRCKDGGGNRNNGGGGQTAGAICERDAGSTYRDSCSEHVVILQLAYTDVAVLALVSM 180

Query: 181 FLASCISAQCGKTLDCKRGNGALI 204
           FLASCISAQCGKTLDCKRGNGALI
Sbjct: 181 FLASCISAQCGKTLDCKRGNGALI 204



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.133    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,461,519
Number of extensions: 161447
Number of successful extensions: 291
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 290
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)