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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0247000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.4 (0.0956) R2 : 0.215
β1 : 2.47 (0.721) R2dD : 0.299 R2D : -0.499
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.86 (0.576) R2dE : 0.248 R2E : -0.575
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 23.4 (4.59) R2dD*E : 1.09 R2D*E : -0.266
γ1 : -0.68 (0.115) R2dN8 : 0.087 R2N8 : -0.0674
σ : 0.972
deviance : 435.72
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 30.69
memory length : 4298
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
429.35 0.974 4.4 2.43 0.308 -1.78 -0.406 23 -0.677 10.2 30.48 4297 -- --
468.2 1.02 4.88 -1.13 0.431 1.46 -0.18 -- -1.03 5.02 -14.55 47520 -- --
429.89 0.966 4.4 2.41 0.311 -1.77 -- 23 -0.675 10.7 30.55 4298 -- --
467.89 1.01 4.89 -1.14 0.441 1.5 -- -- -1.03 4.87 2.109 47520 -- --
435.72 0.972 4.4 2.47 -- -1.86 -- 23.4 -0.68 -- 30.69 4298 -- --
488.01 1.04 4.84 -0.828 0.274 -- -0.589 -- -0.819 9.02 -- -- -- --
489.16 1.04 4.84 -0.847 0.275 -- -- -- -0.819 9.44 -- -- -- --
476 1.02 4.88 -1.05 -- 1.11 -- -- -0.967 -- 2.765 47520 -- --
498.85 1.05 4.84 -- 0.315 0.939 -- -- -0.837 6.2 1.839 47520 -- --
493.6 1.04 4.84 -0.849 -- -- -- -- -0.818 -- -- -- -- --
508.08 1.05 4.82 -- 0.276 -- -- -- -0.724 9.67 -- -- -- --
503.58 1.05 4.84 -- -- 0.772 -- -- -0.812 -- 2.765 47520 -- --
512.61 1.06 4.82 -- -- -- -- -- -0.724 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 412.52 humidity 50 14400 > th dose independent rect. 17 17
2 416.10 humidity 50 14400 > th dose independent rect. 16 19
3 416.58 humidity 50 14400 < th dose dependent rect. 16 19
4 416.59 humidity 50 14400 < th dose independent rect. 17 18
5 416.67 humidity 80 4320 < th dose independent rect. 18 1
6 416.69 humidity 80 4320 < th dose independent rect. 17 3
9 419.00 humidity 80 4320 > th dose independent rect. 18 1
10 419.20 humidity 60 14400 < th dose dependent rect. 17 16
12 419.58 humidity 70 4320 > th dose dependent rect. 18 1
16 421.56 wind 1 14400 < th dose dependent rect. 2 1
19 422.19 humidity 70 4320 > th dose dependent rect. 17 3
27 423.65 humidity 80 4320 < th dose dependent rect. 20 1
33 424.78 temperature 30 4320 > th dose dependent rect. 11 1
37 425.22 humidity 50 14400 > th dose independent sin 11 NA
38 425.22 humidity 60 14400 < th dose independent rect. 17 16
39 425.23 humidity 50 14400 < th dose independent sin 11 NA
40 425.28 humidity 90 4320 < th dose dependent rect. 18 3
43 425.45 temperature 30 4320 > th dose dependent rect. 8 4
58 425.50 humidity 90 4320 < th dose dependent rect. 15 7
60 425.78 temperature 30 4320 > th dose independent rect. 8 4
95 426.01 temperature 30 4320 > th dose independent rect. 10 2
102 426.21 humidity 60 14400 > th dose independent rect. 18 14
110 426.45 temperature 30 4320 > th dose dependent sin 8 NA
111 426.46 temperature 30 4320 > th dose independent rect. 16 20
117 426.55 temperature 30 4320 < th dose independent rect. 24 11
119 426.60 temperature 30 4320 < th dose independent rect. 2 9
145 426.77 humidity 60 14400 > th dose independent rect. 18 12
146 426.77 humidity 80 4320 < th dose dependent rect. 15 1
184 427.10 humidity 60 14400 > th dose independent rect. 18 4
188 427.13 humidity 60 14400 < th dose dependent rect. 17 4
202 427.15 temperature 30 4320 < th dose independent rect. 10 1
209 427.21 humidity 60 14400 > th dose independent rect. 18 8
212 427.23 temperature 30 4320 < th dose independent rect. 16 20
213 427.24 temperature 30 4320 < th dose independent rect. 8 4
215 427.25 humidity 60 14400 > th dose independent rect. 18 6
262 427.71 humidity 60 14400 < th dose independent rect. 18 14
301 428.09 temperature 30 4320 > th dose independent sin 10 NA
322 428.29 temperature 30 4320 < th dose independent sin 10 NA
329 428.47 humidity 60 14400 < th dose independent rect. 18 4
342 428.52 humidity 60 14400 < th dose dependent rect. 18 1
422 429.07 temperature 25 4320 > th dose dependent rect. 1 7
439 429.21 humidity 50 14400 > th dose independent rect. 15 15
449 429.29 humidity 50 14400 > th dose independent rect. 15 7
450 429.29 temperature 25 4320 > th dose dependent rect. 6 1
457 429.35 humidity 50 14400 > th dose independent rect. 15 9
458 429.35 humidity 50 14400 > th dose independent rect. 15 11
573 429.97 humidity 50 14400 < th dose independent rect. 15 3
590 429.98 temperature 30 4320 > th dose dependent no NA NA
702 430.05 wind 1 14400 < th dose independent rect. 2 1
722 430.18 atmosphere 1000 270 > th dose independent rect. 15 22
730 430.27 humidity 50 4320 > th dose dependent rect. 15 1
732 430.31 temperature 30 4320 < th dose independent rect. 17 1
850 430.97 humidity 90 4320 < th dose dependent sin 17 NA
896 431.45 atmosphere 1000 1440 > th dose independent rect. 21 1
907 431.58 humidity 50 4320 > th dose dependent sin 17 NA
964 432.05 temperature 30 4320 > th dose independent rect. 16 2
989 432.32 atmosphere 1000 270 < th dose independent rect. 18 21
999 432.40 atmosphere 1000 1440 > th dose independent rect. 21 3