BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0243900 Os08g0243900|AK121452
         (641 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0243900  Mu2 adaptin subunit (AP50) of AP2 domain conta...  1168   0.0  

>Os08g0243900 Mu2 adaptin subunit (AP50) of AP2 domain containing protein
          Length = 641

 Score = 1168 bits (3022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/641 (90%), Positives = 581/641 (90%)

Query: 1   MACLAISLQPVNGPDILLQTRSWFPVSRALAAVSSFRLARLHLARGKQQQLXXXXXXXXX 60
           MACLAISLQPVNGPDILLQTRSWFPVSRALAAVSSFRLARLHLARGKQQQL         
Sbjct: 1   MACLAISLQPVNGPDILLQTRSWFPVSRALAAVSSFRLARLHLARGKQQQLSSSSSAAAA 60

Query: 61  XXTLEAIGDDPLAAGSGQLVVGVESQYRVVYRLVNSIYVLGVTTSSDHASPAVHAFXXXX 120
             TLEAIGDDPLAAGSGQLVVGVESQYRVVYRLVNSIYVLGVTTSSDHASPAVHAF    
Sbjct: 61  AATLEAIGDDPLAAGSGQLVVGVESQYRVVYRLVNSIYVLGVTTSSDHASPAVHAFAVAD 120

Query: 121 XXXXXXXXXXXXCRGVDVTPEKVHRKYPEVYLALDLVLHGVGSVRLSQILATIHGDNLAR 180
                       CRGVDVTPEKVHRKYPEVYLALDLVLHGVGSVRLSQILATIHGDNLAR
Sbjct: 121 AVNQAVSVVVAACRGVDVTPEKVHRKYPEVYLALDLVLHGVGSVRLSQILATIHGDNLAR 180

Query: 181 MVNSSPDAEAKARGADPWPAVEHLAHDRHAARDGFTGASFELPQETLAAGDEFSASNIXX 240
           MVNSSPDAEAKARGADPWPAVEHLAHDRHAARDGFTGASFELPQETLAAGDEFSASNI  
Sbjct: 181 MVNSSPDAEAKARGADPWPAVEHLAHDRHAARDGFTGASFELPQETLAAGDEFSASNIAP 240

Query: 241 XXXXXXXXXXXXXXXXXXXKDPFAASELVNNSEEALVGGFKKNKETXXXXXXXXXXXXGL 300
                              KDPFAASELVNNSEEALVGGFKKNKET            GL
Sbjct: 241 AAAAATGDEPPPEEAAPVEKDPFAASELVNNSEEALVGGFKKNKETAIVVADPAAALAGL 300

Query: 301 EVTTLPPAEATKPTFIGVEGFEGDYGGIEFGNEEASLAEAFEGFNAPFGGGLDASEFVTT 360
           EVTTLPPAEATKPTFIGVEGFEGDYGGIEFGNEEASLAEAFEGFNAPFGGGLDASEFVTT
Sbjct: 301 EVTTLPPAEATKPTFIGVEGFEGDYGGIEFGNEEASLAEAFEGFNAPFGGGLDASEFVTT 360

Query: 361 TKKDHKDKSITGLELLATSAGQGPNAPGGTPLENLLVTKSTEMTAPELYIVEEVNAEFKE 420
           TKKDHKDKSITGLELLATSAGQGPNAPGGTPLENLLVTKSTEMTAPELYIVEEVNAEFKE
Sbjct: 361 TKKDHKDKSITGLELLATSAGQGPNAPGGTPLENLLVTKSTEMTAPELYIVEEVNAEFKE 420

Query: 421 SILARVGLKGTIFLRTLPPKKAAGKETEFSFRLEGTSGMKKAALQSTVLSNLENGMFHVR 480
           SILARVGLKGTIFLRTLPPKKAAGKETEFSFRLEGTSGMKKAALQSTVLSNLENGMFHVR
Sbjct: 421 SILARVGLKGTIFLRTLPPKKAAGKETEFSFRLEGTSGMKKAALQSTVLSNLENGMFHVR 480

Query: 481 TPSKEEPIPIMKYSFLPKHSPLPLRMRLVKRHSGTLLSVMIQYASNPMLPQPLSNVTFIV 540
           TPSKEEPIPIMKYSFLPKHSPLPLRMRLVKRHSGTLLSVMIQYASNPMLPQPLSNVTFIV
Sbjct: 481 TPSKEEPIPIMKYSFLPKHSPLPLRMRLVKRHSGTLLSVMIQYASNPMLPQPLSNVTFIV 540

Query: 541 KLPVDPTLLNVSPKAVLNRAERELRWHIPDIPLKGPAGRLRARMPVDQDSKDGELEVVGM 600
           KLPVDPTLLNVSPKAVLNRAERELRWHIPDIPLKGPAGRLRARMPVDQDSKDGELEVVGM
Sbjct: 541 KLPVDPTLLNVSPKAVLNRAERELRWHIPDIPLKGPAGRLRARMPVDQDSKDGELEVVGM 600

Query: 601 VKFAYQGPFTLSGIKLCPATDGTAQFNEAGHTFSSGSYLCI 641
           VKFAYQGPFTLSGIKLCPATDGTAQFNEAGHTFSSGSYLCI
Sbjct: 601 VKFAYQGPFTLSGIKLCPATDGTAQFNEAGHTFSSGSYLCI 641



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,212,755
Number of extensions: 826453
Number of successful extensions: 1750
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1748
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 534
Effective length of database: 11,448,903
Effective search space: 6113714202
Effective search space used: 6113714202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)