BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0225100 Os08g0225100|J075143E10
         (116 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0225100  Conserved hypothetical protein                      105   5e-24

>Os08g0225100 Conserved hypothetical protein
          Length = 116

 Score =  105 bits (263), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 55/83 (66%)

Query: 34  LVYYHCXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRHLHISSVNPPSLPPSIKRLFLAVS 93
           LVYYHC                            FRHLHISSVNPPSLPPSIKRLFLAVS
Sbjct: 34  LVYYHCAVRRASAVSLAADVLLVLLCSLSILGLLFRHLHISSVNPPSLPPSIKRLFLAVS 93

Query: 94  WWCRFRCSWFDDTARVLVLSLVG 116
           WWCRFRCSWFDDTARVLVLSLVG
Sbjct: 94  WWCRFRCSWFDDTARVLVLSLVG 116



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.334    0.143    0.533 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,154,487
Number of extensions: 58908
Number of successful extensions: 302
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 17,035,801
Length adjustment: 83
Effective length of query: 33
Effective length of database: 12,702,039
Effective search space: 419167287
Effective search space used: 419167287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 149 (62.0 bits)