BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0222100 Os08g0222100|AK070815
         (226 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0222100  Conserved hypothetical protein                      421   e-118
Os08g0218700  Conserved hypothetical protein                      107   7e-24
Os08g0222800  Conserved hypothetical protein                      105   3e-23

>Os08g0222100 Conserved hypothetical protein
          Length = 226

 Score =  421 bits (1083), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 207/226 (91%), Positives = 207/226 (91%)

Query: 1   MSRSSMAAVFLVVLIAINVVCLSPQGATAAPEGXXXXXXXXXXXXXXXXXXXSTEAYRFT 60
           MSRSSMAAVFLVVLIAINVVCLSPQGATAAPEG                   STEAYRFT
Sbjct: 1   MSRSSMAAVFLVVLIAINVVCLSPQGATAAPEGELHKLNLELPPPLPPGKEPSTEAYRFT 60

Query: 61  QQVCDFGTSTFTEQMIGARCYDVLIPYGESFKGNQVKATQVATIILVTKIQALTSEAYAI 120
           QQVCDFGTSTFTEQMIGARCYDVLIPYGESFKGNQVKATQVATIILVTKIQALTSEAYAI
Sbjct: 61  QQVCDFGTSTFTEQMIGARCYDVLIPYGESFKGNQVKATQVATIILVTKIQALTSEAYAI 120

Query: 121 RDMGIRDENINNCGSFFAIGETFSDTTNSTLYALERLTAAGEGKRSKEDLETVHKWTKNL 180
           RDMGIRDENINNCGSFFAIGETFSDTTNSTLYALERLTAAGEGKRSKEDLETVHKWTKNL
Sbjct: 121 RDMGIRDENINNCGSFFAIGETFSDTTNSTLYALERLTAAGEGKRSKEDLETVHKWTKNL 180

Query: 181 ETQYDETASKCKLGDLFKYGDKKVPTVWVIDLLTTTAIRLLNAIKP 226
           ETQYDETASKCKLGDLFKYGDKKVPTVWVIDLLTTTAIRLLNAIKP
Sbjct: 181 ETQYDETASKCKLGDLFKYGDKKVPTVWVIDLLTTTAIRLLNAIKP 226



>Os08g0218700 Conserved hypothetical protein
          Length = 224

 Score =  107 bits (267), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 111/230 (48%), Gaps = 12/230 (5%)

Query: 1   MSRSSMA-AVFLVVLIAINVVCLSPQGATAAPEGXXXXXXXXXXXXXXXXXXXSTEAYRF 59
           MSRSS + A  LVVL+ ++   LSP  A AA E                    S +A  F
Sbjct: 1   MSRSSSSMATVLVVLMVVSAGGLSPPCAAAAKE---EKPVVVLPPAAAPGEAPSADAAAF 57

Query: 60  TQQVCDFGTSTFTEQMIGARCYDVLIPYGESFKGNQVKATQVATIILVTKIQALTSEAYA 119
            +  CD  T+   ++   + CY  L+PY   F+GNQVK  +VA  IL T +     +   
Sbjct: 58  VRSCCD--TALQADRDGSSFCYYHLLPYAAFFEGNQVKVAEVAATILSTNLWVYVDQLRK 115

Query: 120 IRD-MGIRDENINNCGSFFAIGETFSDTTNSTLYALERLTAAGEGKRSKEDLETVHKWTK 178
           ++   G  D N+N C   F++     + T   L +L RL AAG GKRSKEDLE   KW K
Sbjct: 116 VQGGAGKGDPNLNACVDDFSVAAG-ENITREALQSLGRLAAAGNGKRSKEDLENAQKWIK 174

Query: 179 NLETQYD---ETASKCKLGDLFKYGDKKVPTVWVIDLLTTTAIRLLNAIK 225
            +E  Y+     AS C++G LF Y D  +P    +     TA  L+N IK
Sbjct: 175 GVEKPYNGGIGKASGCEIGYLFTYSD-DLPAQKTLGYTFDTASSLINHIK 223



>Os08g0222800 Conserved hypothetical protein
          Length = 217

 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 105/222 (47%), Gaps = 11/222 (4%)

Query: 8   AVFLVVLIAINVVCLSPQGATAAPEGXXXXXXXXXXXXXXXXXXXSTEAYRFTQQVCDFG 67
           A  LVVL+ ++   LSP  A AA E                    +    R     C+  
Sbjct: 2   ATVLVVLMVVSTGGLSPPCAAAAKEEKPVVVLPPAAAPGEAPFAEAAAFVR---SCCE-- 56

Query: 68  TSTFTEQMIGARCYDVLIPYGESFKGNQVKATQVATIILVTKIQALTSEAYAIRD-MGIR 126
           T+   E+   + CYD L+PY +SF GNQVK T+VA  IL   + A   E   ++D  G  
Sbjct: 57  TALPAERDASSFCYDELLPYADSFGGNQVKVTEVAATILSNNLSAYLDELRKVQDGAGKG 116

Query: 127 DENINNCGSFFAIGETFSDTTNSTLYALERLTAAGEGKRSKEDLETVHKWTKNLETQY-- 184
           D+N+  C   F    T  + T   L +L RL AAG+GKRSKEDLE V KW K ++  Y  
Sbjct: 117 DQNLMACVDGF-TDATNVNITKEALDSLGRLAAAGDGKRSKEDLENVQKWIKGVDKHYVG 175

Query: 185 -DETASKCKLGDLFKYGDKKVPTVWVIDLLTTTAIRLLNAIK 225
            +   S C+ G L+ Y D  +P    +     TA  L+N IK
Sbjct: 176 GNAAGSDCETGYLYTYND-DLPAQETLGNCLYTASSLINHIK 216



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,940,007
Number of extensions: 195596
Number of successful extensions: 411
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 3
Length of query: 226
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 129
Effective length of database: 11,971,043
Effective search space: 1544264547
Effective search space used: 1544264547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)