BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0219100 Os08g0219100|AK106996
(116 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0219100 Conserved hypothetical protein 170 2e-43
Os08g0218700 Conserved hypothetical protein 154 2e-38
Os08g0222800 Conserved hypothetical protein 110 3e-25
>Os08g0219100 Conserved hypothetical protein
Length = 116
Score = 170 bits (430), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/116 (75%), Positives = 87/116 (75%)
Query: 1 MSRSSSSMATVLVVLMVVSAGGLSPPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVRS 60
MSRSSSSMATVLVVLMVVSAGGLSPPC FVRS
Sbjct: 1 MSRSSSSMATVLVVLMVVSAGGLSPPCAAAAKEEKPVVVLPPAAAPGEAPSADAAAFVRS 60
Query: 61 CCDTALQADRDGSSFCYDHLLPYAAFFEGNQVKVAEVAATILSTNLWVYACSLATY 116
CCDTALQADRDGSSFCYDHLLPYAAFFEGNQVKVAEVAATILSTNLWVYACSLATY
Sbjct: 61 CCDTALQADRDGSSFCYDHLLPYAAFFEGNQVKVAEVAATILSTNLWVYACSLATY 116
>Os08g0218700 Conserved hypothetical protein
Length = 224
Score = 154 bits (389), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 80/113 (70%)
Query: 1 MSRSSSSMATVLVVLMVVSAGGLSPPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVRS 60
MSRSSSSMATVLVVLMVVSAGGLSPPC FVRS
Sbjct: 1 MSRSSSSMATVLVVLMVVSAGGLSPPCAAAAKEEKPVVVLPPAAAPGEAPSADAAAFVRS 60
Query: 61 CCDTALQADRDGSSFCYDHLLPYAAFFEGNQVKVAEVAATILSTNLWVYACSL 113
CCDTALQADRDGSSFCY HLLPYAAFFEGNQVKVAEVAATILSTNLWVY L
Sbjct: 61 CCDTALQADRDGSSFCYYHLLPYAAFFEGNQVKVAEVAATILSTNLWVYVDQL 113
>Os08g0222800 Conserved hypothetical protein
Length = 217
Score = 110 bits (274), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 62/102 (60%)
Query: 8 MATVLVVLMVVSAGGLSPPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVRSCCDTALQ 67
MATVLVVLMVVS GGLSPPC FVRSCC+TAL
Sbjct: 1 MATVLVVLMVVSTGGLSPPCAAAAKEEKPVVVLPPAAAPGEAPFAEAAAFVRSCCETALP 60
Query: 68 ADRDGSSFCYDHLLPYAAFFEGNQVKVAEVAATILSTNLWVY 109
A+RD SSFCYD LLPYA F GNQVKV EVAATILS NL Y
Sbjct: 61 AERDASSFCYDELLPYADSFGGNQVKVTEVAATILSNNLSAY 102
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.131 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,638,006
Number of extensions: 56354
Number of successful extensions: 184
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 3
Length of query: 116
Length of database: 17,035,801
Length adjustment: 83
Effective length of query: 33
Effective length of database: 12,702,039
Effective search space: 419167287
Effective search space used: 419167287
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 149 (62.0 bits)