BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0202500 Os08g0202500|AK108353
         (149 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0202500  Conserved hypothetical protein                      140   2e-34

>Os08g0202500 Conserved hypothetical protein
          Length = 149

 Score =  140 bits (354), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/149 (56%), Positives = 84/149 (56%)

Query: 1   MAIGXXXXXXXXXXXXXXXFLQLXXXXXXXXXXXXXXXXXXHRDVKPQXXXXXXXXXXXX 60
           MAIG               FLQL                  HRDVKPQ            
Sbjct: 1   MAIGRRQERRATPRPRRRTFLQLVSAGSSTAATRARARGVSHRDVKPQRSRRPAASTPAS 60

Query: 61  XXXYGGRPQVHPIRRAXXXXXXXXXXXXXXXXXGRTRWCALPCPRFSPPSFALPCRAASV 120
              YGGRPQVHPIRRA                 GRTRWCALPCPRFSPPSFALPCRAASV
Sbjct: 61  RRTYGGRPQVHPIRRARPSPTSTSLSCTPRRRPGRTRWCALPCPRFSPPSFALPCRAASV 120

Query: 121 WQATRRPRPLNLVVWPSASRQQHPILILV 149
           WQATRRPRPLNLVVWPSASRQQHPILILV
Sbjct: 121 WQATRRPRPLNLVVWPSASRQQHPILILV 149



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.329    0.141    0.496 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,360,049
Number of extensions: 119412
Number of successful extensions: 376
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 57
Effective length of database: 12,232,113
Effective search space: 697230441
Effective search space used: 697230441
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 151 (62.8 bits)