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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0202500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.78 (0.0239) R2 : 0.0493
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.245 (0.0504) R2dN8 : 0.0637 R2N8 : 0.0493
σ : 0.45
deviance : 93.14
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
81.41 0.424 2.8 0.316 0.146 0.639 -0.21 1.79 0.175 9.06 10.57 4245 -- --
82.15 0.422 2.8 0.206 0.145 0.565 -0.114 -- 0.152 9.36 10.8 4227 -- --
81.53 0.421 2.8 0.299 0.143 0.646 -- 1.64 0.17 9.66 10.59 4245 -- --
82.03 0.422 2.79 0.207 0.138 0.56 -- -- 0.161 9.58 10.8 4260 -- --
82.62 0.423 2.81 0.302 -- 0.713 -- 1.67 0.158 -- 10.6 4251 -- --
88.37 0.441 2.77 0.195 0.25 -- -0.212 -- 0.265 9.37 -- -- -- --
88.52 0.441 2.77 0.188 0.25 -- -- -- 0.265 9.63 -- -- -- --
83.06 0.424 2.8 0.205 -- 0.634 -- -- 0.141 -- 10.8 4247 -- --
83.11 0.425 2.8 -- 0.139 0.555 -- -- 0.135 9.85 10.82 4245 -- --
92.23 0.449 2.77 0.186 -- -- -- -- 0.265 -- -- -- -- --
89.45 0.442 2.77 -- 0.25 -- -- -- 0.244 9.58 -- -- -- --
84.14 0.427 2.81 -- -- 0.627 -- -- 0.118 -- 10.9 4260 -- --
93.14 0.45 2.78 -- -- -- -- -- 0.245 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.00 wind 9.0 4320 > th dose dependent rect. 12 2
11 83.46 wind 9.0 4320 > th dose independent rect. 13 1
19 83.83 wind 9.0 4320 < th dose independent rect. 12 4
23 83.95 wind 9.0 4320 < th dose independent rect. 13 1
32 84.04 wind 9.0 4320 < th dose independent rect. 15 1
45 84.18 temperature 25.0 270 > th dose independent rect. 6 1
50 84.19 temperature 25.0 10 > th dose independent rect. 6 5
60 84.29 wind 9.0 4320 > th dose dependent rect. 15 1
63 84.30 atmosphere 1000.0 90 > th dose dependent rect. 5 6
69 84.36 wind 9.0 4320 > th dose dependent sin 23 NA
75 84.38 wind 9.0 4320 > th dose independent rect. 15 1
82 84.44 wind 9.0 4320 > th dose dependent rect. 20 20
89 84.47 atmosphere 1005.0 90 > th dose independent rect. 5 6
113 84.58 atmosphere 1005.0 10 > th dose independent rect. 5 7
130 84.62 atmosphere 1005.0 30 > th dose independent rect. 5 11
153 84.71 atmosphere 1005.0 30 > th dose dependent rect. 6 3
159 84.74 temperature 20.0 270 > th dose dependent rect. 4 3
167 84.77 wind 9.0 4320 > th dose independent sin 22 NA
178 84.78 temperature 20.0 30 > th dose dependent rect. 5 4
183 84.79 wind 9.0 4320 > th dose independent rect. 11 13
199 84.80 atmosphere 1000.0 30 > th dose independent rect. 7 23
200 84.80 atmosphere 995.0 30 > th dose dependent rect. 5 11
218 84.82 wind 9.0 4320 < th dose independent rect. 6 10
236 84.84 temperature 25.0 270 < th dose dependent rect. 10 6
243 84.86 wind 9.0 4320 > th dose independent rect. 20 20
244 84.86 temperature 20.0 30 > th dose dependent rect. 5 6
246 84.87 temperature 25.0 270 > th dose independent rect. 4 4
266 84.90 atmosphere 1005.0 30 > th dose independent rect. 5 13
275 84.91 radiation 1.0 30 > th dose dependent rect. 5 2
298 84.95 temperature 25.0 10 > th dose independent rect. 6 3
302 84.96 wind 9.0 4320 < th dose independent rect. 7 1
356 85.01 temperature 10.0 90 > th dose dependent rect. 11 17
362 85.02 temperature 20.0 270 > th dose dependent rect. 3 5
431 85.09 atmosphere 1005.0 30 > th dose independent rect. 5 4
506 85.14 wind 9.0 4320 < th dose independent rect. 11 15
517 85.15 temperature 25.0 270 < th dose dependent rect. 11 2
520 85.15 temperature 10.0 270 > th dose dependent rect. 9 17
535 85.17 temperature 10.0 1440 > th dose independent rect. 7 1
539 85.17 temperature 30.0 1440 < th dose independent rect. 7 1
543 85.17 humidity 50.0 1440 > th dose independent rect. 7 1
548 85.17 atmosphere 995.0 1440 > th dose independent rect. 7 1
549 85.17 atmosphere 1015.0 1440 < th dose independent rect. 7 1
551 85.17 wind 9.0 4320 < th dose independent rect. 20 20
554 85.17 temperature 10.0 1440 > th dose independent rect. 8 23
559 85.17 atmosphere 1005.0 30 > th dose dependent rect. 6 1
562 85.18 wind 9.0 4320 < th dose independent sin 22 NA
568 85.18 radiation 40.0 10 > th dose dependent rect. 11 1
572 85.19 humidity 90.0 30 < th dose independent rect. 6 1
579 85.19 wind 9.0 4320 < th dose independent rect. 23 17
596 85.20 atmosphere 1005.0 30 > th dose independent rect. 6 1
614 85.21 wind 3.0 30 < th dose independent rect. 6 1
615 85.21 temperature 25.0 10 > th dose independent rect. 6 1
624 85.21 wind 5.0 30 < th dose dependent rect. 6 1
632 85.22 humidity 80.0 30 > th dose independent rect. 6 1
634 85.22 radiation 1.0 30 > th dose independent rect. 6 1
649 85.23 wind 1.0 30 > th dose independent rect. 6 1
654 85.23 temperature 10.0 30 > th dose independent rect. 6 1
656 85.23 temperature 30.0 30 < th dose independent rect. 6 1
657 85.23 humidity 50.0 30 > th dose independent rect. 6 1
661 85.23 atmosphere 1015.0 30 < th dose independent rect. 6 1
662 85.23 radiation 20.0 30 < th dose independent rect. 6 1
665 85.23 precipitation 0.1 30 < th dose independent rect. 6 1
671 85.23 temperature 10.0 30 > th dose independent rect. 7 23
672 85.23 humidity 50.0 30 > th dose dependent rect. 6 1
673 85.23 precipitation 0.1 30 < th dose dependent rect. 6 1
677 85.24 atmosphere 1005.0 270 > th dose independent rect. 4 3
682 85.24 temperature 10.0 30 > th dose dependent rect. 6 1
700 85.26 radiation 40.0 30 < th dose dependent rect. 6 1
750 85.30 temperature 30.0 30 < th dose dependent rect. 6 1
755 85.30 atmosphere 1000.0 30 > th dose dependent rect. 5 13
766 85.31 precipitation 0.1 30 < th dose independent rect. 7 23
775 85.31 precipitation 0.1 30 < th dose dependent rect. 7 23
779 85.32 atmosphere 1005.0 10 > th dose independent rect. 5 9
795 85.32 temperature 10.0 30 > th dose dependent rect. 9 20
811 85.34 humidity 90.0 10 < th dose dependent rect. 6 1
888 85.37 wind 9.0 4320 > th dose dependent no NA NA
890 85.37 atmosphere 1015.0 30 < th dose dependent rect. 6 1
933 85.40 humidity 90.0 30 < th dose independent rect. 6 3
999 85.44 wind 9.0 30 < th dose independent rect. 7 23