BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0199100 Os08g0199100|AK106893
         (284 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0199100  Conserved hypothetical protein                      343   1e-94

>Os08g0199100 Conserved hypothetical protein
          Length = 284

 Score =  343 bits (879), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 199/284 (70%), Positives = 199/284 (70%)

Query: 1   NAHPPEEASLGLRSQLKASDHSAAAPAIXXXXXXXXXXXXQRATGRSLAPLQRNLDLVSL 60
           NAHPPEEASLGLRSQLKASDHSAAAPAI            QRATGRSLAPLQRNLDLVSL
Sbjct: 1   NAHPPEEASLGLRSQLKASDHSAAAPAISSGRSSPPLRSSQRATGRSLAPLQRNLDLVSL 60

Query: 61  FLAVSFVQATRSTECPGETPPGGRCLVAGRSRRGSQGPARRSVPPTRSAKCLXXXXXXXX 120
           FLAVSFVQATRSTECPGETPPGGRCLVAGRSRRGSQGPARRSVPPTRSAKCL        
Sbjct: 61  FLAVSFVQATRSTECPGETPPGGRCLVAGRSRRGSQGPARRSVPPTRSAKCLGGGPPPPR 120

Query: 121 XXXXATKCTRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRWCAPACSXXXXXXXXXXXX 180
               ATKCTRG                            GRWCAPACS            
Sbjct: 121 GGCGATKCTRGSPAAPPPSTDSAPSRTRSCTTSCRSSRRGRWCAPACSRAAGATPGPPRR 180

Query: 181 XXXXXXXXXXXXGVPXXXXXXXXXSAGSCTACCWRGRFPHRLTRSGCGRATGRNMPRCMT 240
                       GVP         SAGSCTACCWRGRFPHRLTRSGCGRATGRNMPRCMT
Sbjct: 181 ALTSALRALAASGVPAATATRRRTSAGSCTACCWRGRFPHRLTRSGCGRATGRNMPRCMT 240

Query: 241 MMMSTCGSLLRSNAMLESFTLTGTARTTTWCWSTLPLSLNASRS 284
           MMMSTCGSLLRSNAMLESFTLTGTARTTTWCWSTLPLSLNASRS
Sbjct: 241 MMMSTCGSLLRSNAMLESFTLTGTARTTTWCWSTLPLSLNASRS 284



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.129    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,267,584
Number of extensions: 232509
Number of successful extensions: 775
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 773
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 184
Effective length of database: 11,814,401
Effective search space: 2173849784
Effective search space used: 2173849784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)