FiT-DB / Search/ Help/ Sample detail

Os08g0199100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.92 (0.0278) R2 : 0.14
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.556 (0.0669) R2dC : 0.131 R2C : 0.127
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.132 (0.0583) R2dN8 : 0.0126 R2N8 : 0.00922
σ : 0.523
deviance : 124.93
__
_____
C
peak time of C : 10.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
109.38 0.491 6.94 0.108 0.26 -0.606 -1.68 1.58 -0.166 2.86 4.904 9 -- --
111.53 0.496 6.93 0.181 0.161 -0.425 -1.56 -- -0.143 7.24 4.904 9 -- --
114.41 0.498 6.93 0.147 0.255 -0.598 -- 0.768 -0.145 2.77 5.001 8 -- --
117.42 0.505 6.94 0.143 0.254 -0.611 -- -- -0.15 2.41 5.143 6 -- --
116.12 0.505 6.94 0.147 -- -0.472 -- 0.673 -0.143 -- 4.917 6 -- --
120.61 0.515 6.91 0.194 0.552 -- -1.04 -- -0.115 9.78 -- -- -- --
124.27 0.522 6.92 0.158 0.557 -- -- -- -0.115 10.4 -- -- -- --
118.95 0.508 6.94 0.157 -- -0.483 -- -- -0.14 -- 4.916 3 -- --
117.97 0.506 6.94 -- 0.246 -0.605 -- -- -0.167 2.59 5.167 6 -- --
143.23 0.559 6.93 0.149 -- -- -- -- -0.117 -- -- -- -- --
124.93 0.523 6.92 -- 0.556 -- -- -- -0.132 10.4 -- -- -- --
119.59 0.509 6.94 -- -- -0.482 -- -- -0.156 -- 4.91 3 -- --
143.82 0.56 6.93 -- -- -- -- -- -0.133 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 95.32 temperature 10.0 270 > th dose dependent rect. 22 5
2 95.50 temperature 10.0 270 > th dose dependent rect. 23 3
3 95.62 atmosphere 995.0 270 > th dose dependent rect. 23 3
5 95.95 atmosphere 1000.0 270 > th dose independent rect. 23 3
6 96.14 atmosphere 1000.0 270 > th dose independent rect. 22 5
9 96.32 humidity 80.0 270 > th dose independent rect. 22 5
12 96.60 precipitation 0.1 270 < th dose independent rect. 2 21
13 96.60 precipitation 0.1 270 < th dose dependent rect. 2 21
16 96.73 atmosphere 995.0 10 > th dose dependent rect. 24 5
18 96.76 precipitation 0.1 270 < th dose independent rect. 3 19
19 96.76 temperature 10.0 10 > th dose dependent rect. 5 19
20 96.76 precipitation 0.1 270 < th dose dependent rect. 3 19
21 97.03 temperature 10.0 270 > th dose dependent rect. 3 6
23 97.11 wind 9.0 270 < th dose independent rect. 3 19
24 97.17 wind 9.0 270 < th dose independent rect. 2 21
27 97.49 atmosphere 1000.0 10 > th dose independent rect. 24 5
30 97.65 atmosphere 1010.0 270 < th dose independent rect. 23 3
31 97.67 temperature 10.0 270 > th dose independent rect. 22 5
32 97.67 temperature 30.0 270 < th dose independent rect. 22 5
33 97.67 humidity 50.0 270 > th dose independent rect. 22 5
37 97.67 radiation 1.0 270 < th dose independent rect. 22 5
42 97.67 temperature 10.0 270 > th dose independent rect. 3 19
43 97.67 radiation 1.0 270 < th dose dependent rect. 22 5
48 97.68 wind 9.0 270 < th dose independent rect. 22 5
52 97.73 precipitation 0.1 270 < th dose independent rect. 22 5
53 97.73 precipitation 0.1 270 < th dose dependent rect. 22 5
54 97.74 wind 9.0 270 < th dose independent rect. 23 3
55 97.74 temperature 10.0 270 > th dose independent rect. 23 3
56 97.74 temperature 30.0 270 < th dose independent rect. 23 3
57 97.74 humidity 50.0 270 > th dose independent rect. 23 3
61 97.74 radiation 1.0 270 < th dose independent rect. 23 3
67 97.74 temperature 10.0 270 > th dose independent rect. 2 21
68 97.74 radiation 1.0 270 < th dose dependent rect. 23 3
73 97.74 wind 9.0 270 < th dose dependent rect. 22 5
75 97.75 radiation 1.0 10 < th dose independent rect. 24 16
77 97.76 precipitation 0.1 270 < th dose independent rect. 23 3
78 97.76 precipitation 0.1 270 < th dose dependent rect. 23 3
82 97.78 atmosphere 1015.0 270 < th dose independent rect. 22 5
85 97.85 radiation 1.0 30 > th dose independent sin 7 NA
88 97.90 radiation 1.0 30 < th dose dependent sin 6 NA
90 97.91 radiation 1.0 10 < th dose independent sin 6 NA
93 97.99 wind 9.0 270 < th dose dependent rect. 23 3
97 98.02 humidity 50.0 270 > th dose dependent rect. 22 5
102 98.10 radiation 1.0 10 < th dose dependent rect. 24 17
106 98.20 temperature 10.0 10 > th dose dependent rect. 24 5
108 98.22 radiation 1.0 10 < th dose independent rect. 24 14
116 98.37 radiation 1.0 10 < th dose independent rect. 24 6
119 98.40 radiation 1.0 10 < th dose independent rect. 24 12
122 98.40 humidity 50.0 270 > th dose dependent rect. 23 3
129 98.43 radiation 1.0 10 < th dose independent rect. 24 8
142 98.60 radiation 1.0 10 < th dose dependent rect. 24 6
144 98.61 radiation 1.0 10 < th dose dependent rect. 24 14
181 98.79 wind 9.0 10 < th dose dependent rect. 24 5
182 98.79 radiation 1.0 10 < th dose dependent rect. 24 12
186 98.82 radiation 1.0 10 < th dose dependent rect. 24 8
194 98.86 wind 9.0 10 < th dose independent rect. 5 19
204 99.01 precipitation 0.1 10 < th dose independent rect. 5 19
205 99.01 precipitation 0.1 10 < th dose dependent rect. 5 19
212 99.05 atmosphere 1010.0 10 < th dose independent rect. 24 5
220 99.09 wind 9.0 10 < th dose independent rect. 24 5
221 99.09 temperature 10.0 10 > th dose independent rect. 24 5
222 99.09 temperature 30.0 10 < th dose independent rect. 24 5
223 99.09 humidity 50.0 10 > th dose independent rect. 24 5
232 99.09 temperature 10.0 10 > th dose independent rect. 5 19
234 99.09 humidity 50.0 10 > th dose dependent rect. 24 5
235 99.09 radiation 40.0 10 < th dose dependent rect. 24 5
246 99.20 atmosphere 1000.0 90 > th dose independent rect. 1 2
259 99.35 wind 1.0 270 > th dose independent rect. 23 3
264 99.43 humidity 50.0 10 > th dose independent rect. 5 19
265 99.47 temperature 15.0 10 > th dose dependent rect. 5 5
277 99.59 wind 3.0 270 < th dose independent rect. 22 5
281 99.63 atmosphere 1015.0 270 < th dose independent rect. 3 19
299 99.83 atmosphere 995.0 270 > th dose independent rect. 3 19
338 99.94 precipitation 0.1 10 < th dose independent rect. 24 5
340 99.94 precipitation 0.1 10 < th dose dependent rect. 24 5
358 100.13 temperature 25.0 90 > th dose independent rect. 1 3
376 100.25 atmosphere 995.0 10 > th dose independent rect. 5 19
392 100.33 humidity 50.0 270 > th dose independent rect. 3 19
403 100.42 wind 9.0 90 < th dose dependent rect. 1 2
413 100.46 radiation 40.0 270 < th dose independent rect. 3 6
447 100.61 humidity 50.0 90 > th dose dependent rect. 1 2
465 100.72 wind 1.0 270 > th dose independent rect. 24 1
503 100.89 wind 7.0 90 < th dose independent rect. 1 2
505 100.89 precipitation 0.1 270 < th dose independent rect. 3 6
506 100.89 precipitation 0.1 270 < th dose dependent rect. 3 6
512 100.90 atmosphere 995.0 270 > th dose independent rect. 2 21
513 100.90 temperature 15.0 270 > th dose dependent rect. 5 2
554 100.93 wind 3.0 90 < th dose independent rect. 1 2
559 100.94 precipitation 0.1 90 < th dose independent rect. 1 2
561 100.94 precipitation 0.1 90 < th dose dependent rect. 1 2
567 100.96 temperature 10.0 90 > th dose independent rect. 1 2
569 100.96 temperature 30.0 90 < th dose independent rect. 1 2
570 100.96 humidity 50.0 90 > th dose independent rect. 1 2
574 100.96 atmosphere 1010.0 90 < th dose independent rect. 1 2
576 100.96 radiation 1.0 90 < th dose independent rect. 1 2
583 100.96 radiation 1.0 90 < th dose dependent rect. 1 2
682 101.15 atmosphere 1015.0 10 < th dose independent rect. 5 19
778 101.45 wind 9.0 270 < th dose independent rect. 3 6
779 101.45 temperature 10.0 270 > th dose independent rect. 3 6
783 101.45 humidity 50.0 270 > th dose independent rect. 3 6
787 101.45 atmosphere 995.0 270 > th dose independent rect. 3 6
789 101.45 atmosphere 1015.0 270 < th dose independent rect. 3 6
796 101.45 temperature 10.0 270 > th dose independent rect. 9 18
834 101.51 radiation 1.0 10 > th dose independent rect. 5 5
888 101.57 atmosphere 995.0 270 > th dose independent rect. 9 18
897 101.61 temperature 30.0 270 < th dose independent rect. 3 6
944 101.75 precipitation 0.1 10 < th dose independent rect. 5 6
945 101.75 precipitation 0.1 10 < th dose dependent rect. 5 6
962 101.83 wind 1.0 90 > th dose independent rect. 24 5
967 101.85 atmosphere 1000.0 10 > th dose independent rect. 11 18
973 101.88 temperature 10.0 10 > th dose independent rect. 5 6
975 101.88 humidity 50.0 10 > th dose independent rect. 5 6
976 101.88 atmosphere 995.0 10 > th dose independent rect. 5 6
977 101.88 atmosphere 1015.0 10 < th dose independent rect. 5 6
978 101.88 temperature 10.0 10 > th dose independent rect. 11 18
984 101.89 wind 1.0 270 > th dose independent rect. 22 5