BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0198300 Os08g0198300|AK105288
         (113 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0198300  TRAF-like domain containing protein                 184   1e-47
Os06g0669050                                                       82   1e-16
Os06g0251200  TRAF-like domain containing protein                  68   1e-12
Os06g0669225                                                       66   5e-12

>Os08g0198300 TRAF-like domain containing protein
          Length = 113

 Score =  184 bits (468), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1  MGASFSSNLTDAARAVHMFKINGYSATRAMARTDSLPSRRLPVGGYHWELRYTASLIADS 60
          MGASFSSNLTDAARAVHMFKINGYSATRAMARTDSLPSRRLPVGGYHWELRYTASLIADS
Sbjct: 1  MGASFSSNLTDAARAVHMFKINGYSATRAMARTDSLPSRRLPVGGYHWELRYTASLIADS 60

Query: 61 NHWVALKLVLLAAPTSRPRSDAASSAIVPPPL 92
          NHWVALKLVLLAAPTSRPRSDAASSAIVPPPL
Sbjct: 61 NHWVALKLVLLAAPTSRPRSDAASSAIVPPPL 92



>Os06g0669050 
          Length = 273

 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 49/74 (66%)

Query: 6  SSNLTDAARAVHMFKINGYSATRAMARTDSLPSRRLPVGGYHWELRYTASLIADSNHWVA 65
          SSNLT AARAVH F +NGYSAT+AMA+ + + S+RL V GY WE+ YT    A  ++WVA
Sbjct: 4  SSNLTQAARAVHKFNVNGYSATKAMAKHEHVSSKRLTVAGYAWEIHYTPGHDAHWHYWVA 63

Query: 66 LKLVLLAAPTSRPR 79
           KLV L       R
Sbjct: 64 FKLVFLGIGEQAQR 77



>Os06g0251200 TRAF-like domain containing protein
          Length = 352

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 43/66 (65%)

Query: 7  SNLTDAARAVHMFKINGYSATRAMARTDSLPSRRLPVGGYHWELRYTASLIADSNHWVAL 66
          +NLT+   AVH+ KINGYS TRA+  ++ + SRRL  GGY WE+ Y         +W+AL
Sbjct: 5  TNLTNTISAVHLLKINGYSVTRALGCSEYISSRRLAAGGYDWEVLYYPRYYEHGVYWIAL 64

Query: 67 KLVLLA 72
          +L+ ++
Sbjct: 65 RLMFMS 70



>Os06g0669225 
          Length = 147

 Score = 66.2 bits (160), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 3/76 (3%)

Query: 4  SFSS-NLTDAARAVHMFKINGYSATRAMARTDSLPSRRLPVGGYHWELRYT-ASLIADSN 61
          SFSS NLT+A  A+H   +NGYSAT++    D  PSRRL VGGY WE+RY     I   +
Sbjct: 2  SFSSWNLTEATSAIHDITVNGYSATKSGGEND-FPSRRLTVGGYEWEIRYYPKVFITHGD 60

Query: 62 HWVALKLVLLAAPTSR 77
          + +A +LV L    +R
Sbjct: 61 YRIAFRLVFLGPAGAR 76



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.128    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,289,969
Number of extensions: 110871
Number of successful extensions: 486
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 4
Length of query: 113
Length of database: 17,035,801
Length adjustment: 80
Effective length of query: 33
Effective length of database: 12,858,681
Effective search space: 424336473
Effective search space used: 424336473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)