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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0198300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : TRAF-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.54 (0.0256) R2 : 0.0731
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.323 (0.0538) R2dN8 : 0.0944 R2N8 : 0.0731
σ : 0.481
deviance : 106.29
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.86 0.448 3.59 0.0892 0.407 -0.144 -0.279 -2.22 0.271 3.72 9.985 4239 -- --
94.57 0.456 3.54 0.0608 0.583 -0.213 0.0112 -- 0.326 2.42 10 4340 -- --
90.94 0.444 3.6 0.106 0.411 -0.128 -- -2.2 0.269 3.61 9.874 3875 -- --
94.58 0.456 3.54 0.0605 0.582 -0.212 -- -- 0.326 2.43 10 4340 -- --
100.01 0.466 3.59 0.14 -- -0.212 -- -2.25 0.27 -- 9.46 4075 -- --
96.09 0.46 3.54 0.0793 0.422 -- -0.163 -- 0.322 3.6 -- -- -- --
96.17 0.459 3.54 0.0819 0.42 -- -- -- 0.323 3.52 -- -- -- --
104.65 0.479 3.54 0.117 -- 0.135 -- -- 0.336 -- 20 4072 -- --
94.67 0.456 3.54 -- 0.587 -0.217 -- -- 0.319 2.41 10 4340 -- --
106.03 0.481 3.54 0.0996 -- -- -- -- 0.334 -- -- -- -- --
96.35 0.459 3.54 -- 0.422 -- -- -- 0.313 3.52 -- -- -- --
104.85 0.477 3.54 -- -- -0.275 -- -- 0.3 -- 10 4081 -- --
106.29 0.481 3.54 -- -- -- -- -- 0.323 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 89.19 atmosphere 1005.0 90 > th dose dependent rect. 2 1
2 89.77 atmosphere 1005.0 10 > th dose dependent rect. 2 2
5 89.88 temperature 20.0 90 > th dose dependent rect. 20 7
6 89.94 atmosphere 1005.0 90 > th dose independent rect. 2 1
7 89.98 radiation 20.0 10 < th dose dependent rect. 3 23
8 90.04 wind 1.0 10 < th dose independent rect. 2 1
9 90.06 temperature 20.0 10 > th dose dependent rect. 2 1
10 90.09 temperature 15.0 90 > th dose dependent rect. 2 1
11 90.10 precipitation 0.1 30 < th dose independent rect. 3 23
12 90.10 precipitation 0.1 30 < th dose dependent rect. 3 23
13 90.12 humidity 90.0 30 > th dose dependent rect. 2 1
14 90.13 atmosphere 995.0 30 > th dose independent rect. 3 23
17 90.16 temperature 20.0 10 > th dose independent rect. 2 1
18 90.18 wind 3.0 10 < th dose dependent rect. 2 1
24 90.24 wind 1.0 10 > th dose independent rect. 16 15
25 90.25 humidity 90.0 10 > th dose independent rect. 2 1
33 90.27 atmosphere 1010.0 30 < th dose dependent rect. 2 1
44 90.31 humidity 50.0 30 > th dose dependent rect. 2 1
46 90.32 wind 9.0 30 < th dose independent rect. 2 1
47 90.32 temperature 10.0 30 > th dose independent rect. 2 1
49 90.32 temperature 30.0 30 < th dose independent rect. 2 1
50 90.32 humidity 50.0 30 > th dose independent rect. 2 1
53 90.32 atmosphere 995.0 30 > th dose independent rect. 2 1
54 90.32 atmosphere 1010.0 30 < th dose independent rect. 2 1
56 90.32 radiation 1.0 30 < th dose independent rect. 2 1
61 90.32 precipitation 0.1 30 < th dose independent rect. 2 1
62 90.32 temperature 10.0 30 > th dose independent rect. 3 23
64 90.32 radiation 1.0 30 < th dose dependent rect. 2 1
69 90.32 precipitation 0.1 30 < th dose dependent rect. 2 1
83 90.38 wind 9.0 4320 < th dose independent rect. 3 1
121 90.47 temperature 30.0 30 < th dose dependent rect. 2 1
123 90.48 radiation 10.0 4320 < th dose independent rect. 14 19
126 90.49 radiation 1.0 4320 < th dose dependent rect. 3 1
129 90.51 temperature 10.0 1440 > th dose independent rect. 3 1
132 90.51 temperature 30.0 1440 < th dose independent rect. 3 1
136 90.51 humidity 50.0 1440 > th dose independent rect. 3 1
146 90.51 atmosphere 995.0 1440 > th dose independent rect. 3 1
147 90.51 radiation 1.0 1440 < th dose independent rect. 3 1
167 90.51 temperature 10.0 1440 > th dose independent rect. 4 23
183 90.53 wind 1.0 30 > th dose independent rect. 2 1
193 90.60 radiation 10.0 4320 < th dose independent rect. 14 21
202 90.63 radiation 20.0 4320 < th dose dependent rect. 16 16
207 90.68 radiation 10.0 4320 < th dose independent sin 12 NA
223 90.75 radiation 1.0 4320 > th dose dependent rect. 16 16
229 90.81 temperature 20.0 30 > th dose independent rect. 12 15
232 90.81 temperature 30.0 30 < th dose independent rect. 3 23
241 90.84 radiation 10.0 4320 < th dose dependent rect. 17 14
245 90.85 radiation 10.0 4320 < th dose dependent sin 12 NA
252 90.88 wind 9.0 30 < th dose independent rect. 3 23
286 90.96 radiation 1.0 4320 > th dose dependent sin 11 NA
292 90.98 radiation 10.0 4320 < th dose independent rect. 5 7
298 90.98 radiation 40.0 4320 < th dose dependent sin 11 NA
300 90.98 radiation 40.0 4320 < th dose dependent rect. 3 3
309 91.00 radiation 10.0 4320 < th dose independent no NA NA
311 91.00 radiation 10.0 4320 < th dose independent rect. 4 14
372 91.01 radiation 10.0 4320 < th dose independent sin 5 NA
408 91.01 radiation 10.0 4320 < th dose dependent rect. 16 20
438 91.05 radiation 10.0 4320 < th dose independent rect. 8 23
471 91.11 temperature 20.0 270 > th dose dependent rect. 23 1
474 91.11 radiation 10.0 4320 < th dose dependent rect. 18 12
483 91.13 wind 1.0 90 > th dose independent rect. 3 23
484 91.13 humidity 50.0 30 > th dose independent rect. 3 23
547 91.20 temperature 30.0 4320 > th dose dependent rect. 8 1
635 91.25 radiation 10.0 4320 < th dose independent rect. 6 1
695 91.30 radiation 20.0 14400 > th dose independent rect. 16 16
703 91.30 radiation 1.0 4320 > th dose dependent rect. 5 1
734 91.32 wind 9.0 43200 < th dose independent rect. 24 4
735 91.32 radiation 10.0 4320 < th dose independent rect. 14 5
738 91.32 temperature 20.0 90 > th dose independent rect. 19 8
753 91.33 humidity 80.0 43200 > th dose independent rect. 7 1
807 91.36 radiation 40.0 4320 < th dose independent rect. 14 21
809 91.36 radiation 30.0 14400 > th dose dependent rect. 7 2
875 91.38 wind 3.0 10 < th dose dependent rect. 13 14
887 91.39 humidity 60.0 43200 > th dose dependent rect. 7 3
942 91.42 radiation 40.0 4320 < th dose independent sin 11 NA
952 91.42 radiation 1.0 4320 > th dose dependent rect. 17 2
978 91.43 humidity 60.0 43200 > th dose dependent rect. 8 1
991 91.44 radiation 10.0 10 < th dose independent rect. 4 22