BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0173300 Os08g0173300|J065196D12
(182 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0173300 Conserved hypothetical protein 223 7e-59
Os08g0173000 175 2e-44
Os08g0173200 94 6e-20
>Os08g0173300 Conserved hypothetical protein
Length = 182
Score = 223 bits (567), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 121/154 (78%), Positives = 121/154 (78%)
Query: 1 MASALASPTSPSFLPAHLLRPHXXXXXXXXXXXXXKVLVRDAPPETGGGPHHNAILLRQP 60
MASALASPTSPSFLPAHLLRPH KVLVRDAPPETGGGPHHNAILLRQP
Sbjct: 1 MASALASPTSPSFLPAHLLRPHAASSSSGLQLAGAKVLVRDAPPETGGGPHHNAILLRQP 60
Query: 61 PVMLAAAAGIPEQGSGPHHNAVPQWKPRGGGELRLPASPPVILAAAGTTPERGNGSKTNA 120
PVMLAAAAGIPEQGSGPHHNAVPQWKPRGGGELRLPASPPVILAAAGTTPERGNGSKTNA
Sbjct: 61 PVMLAAAAGIPEQGSGPHHNAVPQWKPRGGGELRLPASPPVILAAAGTTPERGNGSKTNA 120
Query: 121 VLXXXXXXXXXXXXXXXXXXXXVIHAVADSAPQR 154
VL VIHAVADSAPQR
Sbjct: 121 VLRRPTPPGGAGPREGRGGRGGVIHAVADSAPQR 154
>Os08g0173000
Length = 168
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/151 (68%), Positives = 110/151 (72%), Gaps = 9/151 (5%)
Query: 5 LASPTSPS-FLPAHLLRPHXXXXXXXXXXXXXKVLVRDAPPETGGGPHHNAILLRQPPVM 63
+ASPTSPS FLPAHLLRPH VLVRDAPPETGGGPHHNA+L RQPPVM
Sbjct: 1 MASPTSPSSFLPAHLLRPHAASLAGA------NVLVRDAPPETGGGPHHNAVL-RQPPVM 53
Query: 64 LAAAAGIPEQGSGPHHNAVPQWKPRGGGELRLPASPPVILAAAGTTPERGNGSKTNAVLX 123
LAAAAG PEQGSGPH+NAV QWKPRGG +LRLPASPPVILAAA +TPE+GNG KTNAVL
Sbjct: 54 LAAAAGTPEQGSGPHYNAVTQWKPRGGDQLRLPASPPVILAAA-STPEQGNGPKTNAVLR 112
Query: 124 XXXXXXXXXXXXXXXXXXXVIHAVADSAPQR 154
VIHAVADSAPQR
Sbjct: 113 RPTPPGGAGPREGSGGRGGVIHAVADSAPQR 143
>Os08g0173200
Length = 137
Score = 94.0 bits (232), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 78/155 (50%), Gaps = 44/155 (28%)
Query: 1 MASALASPTSPSFLPAHLLRPHXXXXXXXXXXXXXKVLVRD-APPETGGGPHHNAILLRQ 59
MASALA P +PAHLL+PH VL+RD APPE G GPHHNA+LL Q
Sbjct: 1 MASALA----PFLIPAHLLQPHAASASSGLQLAGANVLLRDDAPPEGGRGPHHNAVLLPQ 56
Query: 60 PPVMLAAAAGIPEQGSGPHHNAVPQWKPRGGGELRLPASPPVILAAAGTTPERGNGSKTN 119
PPVMLAAAAG PEQG+GP NAV LR P P G P G+G +
Sbjct: 57 PPVMLAAAAGTPEQGNGPKINAV----------LRRPTPP------GGAGPREGSGGRGG 100
Query: 120 AVLXXXXXXXXXXXXXXXXXXXXVIHAVADSAPQR 154
VIHA+ADSAPQR
Sbjct: 101 -----------------------VIHAIADSAPQR 112
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.132 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,182,719
Number of extensions: 317996
Number of successful extensions: 847
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 827
Number of HSP's successfully gapped: 3
Length of query: 182
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 87
Effective length of database: 12,075,471
Effective search space: 1050565977
Effective search space used: 1050565977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 153 (63.5 bits)