BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0159000 Os08g0159000|AK103973
(325 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0159000 Similar to DnaJ homolog subfamily C member 1 298 4e-81
AK112087 67 3e-11
Os04g0377932 Similar to Gonidia forming protein GlsA 66 3e-11
>Os08g0159000 Similar to DnaJ homolog subfamily C member 1
Length = 325
Score = 298 bits (763), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 172/325 (52%), Positives = 172/325 (52%)
Query: 1 MEFIDDDWDYQPRARVIHXXXXXXXXXXXXXXXXQPTRSLPHTXXXXXXXXXXXXXXXXX 60
MEFIDDDWDYQPRARVIH QPTRSLPHT
Sbjct: 1 MEFIDDDWDYQPRARVIHSRSNANSNGATTASSSQPTRSLPHTAACAAAAVALLAAAYYL 60
Query: 61 XPDYQXXXXXXXXXXXXXXXXXXXXXXXTGGDVSVGRGDXXXXXXXXXXXXSDPAPTXXX 120
PDYQ TGGDVSVGRGD SDPAPT
Sbjct: 61 LPDYQVLASVVVWVASSLLLAPFAPSSATGGDVSVGRGDPLPEQEPVEEPVSDPAPTSRR 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGEAVEDAGEWTDQEMDI 180
DGGEAVEDAGEWTDQEMDI
Sbjct: 121 GRRQSSSSNPTPPPPKPSDPIAPPPPRHAAAAAAAAATAVSDGGEAVEDAGEWTDQEMDI 180
Query: 181 LRRQMVKHPAGEPQRWEKIAAAFGGRRTPESVIRXXXXXXXXXXXXXXFDQFLRKRKPLD 240
LRRQMVKHPAGEPQRWEKIAAAFGGRRTPESVIR FDQFLRKRKPLD
Sbjct: 181 LRRQMVKHPAGEPQRWEKIAAAFGGRRTPESVIRAAKSGGGAAAAGASFDQFLRKRKPLD 240
Query: 241 PRSEXXXXXXXXXXXXXXXXXXXXXXXXXXRALLNALKEFPKDTAMRWEKVAVAVPGKTK 300
PRSE RALLNALKEFPKDTAMRWEKVAVAVPGKTK
Sbjct: 241 PRSEATDAGSGNAGGGGGESGDGSWSAGDDRALLNALKEFPKDTAMRWEKVAVAVPGKTK 300
Query: 301 AACMKRVTELKRDFRSSKAASEAAP 325
AACMKRVTELKRDFRSSKAASEAAP
Sbjct: 301 AACMKRVTELKRDFRSSKAASEAAP 325
>AK112087
Length = 428
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 38/49 (77%)
Query: 272 ALLNALKEFPKDTAMRWEKVAVAVPGKTKAACMKRVTELKRDFRSSKAA 320
AL+ ALK FPKD + RWE+VA AVPGKT C K+V E++++FRS K+A
Sbjct: 379 ALVQALKAFPKDASQRWERVAAAVPGKTMVQCKKKVAEMQKNFRSKKSA 427
>Os04g0377932 Similar to Gonidia forming protein GlsA
Length = 335
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 38/49 (77%)
Query: 272 ALLNALKEFPKDTAMRWEKVAVAVPGKTKAACMKRVTELKRDFRSSKAA 320
AL+ ALK FPKD + RWE+VA AVPGKT C K+V E++++FRS K+A
Sbjct: 282 ALVQALKAFPKDASQRWERVAAAVPGKTMVQCKKKVAEMQKNFRSKKSA 330
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.132 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,544,507
Number of extensions: 175932
Number of successful extensions: 488
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 483
Number of HSP's successfully gapped: 4
Length of query: 325
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 224
Effective length of database: 11,762,187
Effective search space: 2634729888
Effective search space used: 2634729888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)