BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0158900 Os08g0158900|AK067062
(463 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0158900 GTP1/OBG domain containing protein 844 0.0
AK108825 133 2e-31
AK108927 131 8e-31
>Os08g0158900 GTP1/OBG domain containing protein
Length = 463
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/463 (90%), Positives = 417/463 (90%)
Query: 1 MRAAAGGRGFLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGILSTLERGVSTL 60
MRAAAGGRGFLL EGILSTLERGVSTL
Sbjct: 1 MRAAAGGRGFLLHPRPPWRAPATPPCPPPPATATALARRLHHRRLPEGILSTLERGVSTL 60
Query: 61 HLRCWVHCATCGVTLHDISQAEPVNGAKSDLVQKHEKVGAFQRIPMVMPATDILMSAQRK 120
HLRCWVHCATCGVTLHDISQAEPVNGAKSDLVQKHEKVGAFQRIPMVMPATDILMSAQRK
Sbjct: 61 HLRCWVHCATCGVTLHDISQAEPVNGAKSDLVQKHEKVGAFQRIPMVMPATDILMSAQRK 120
Query: 121 SRNVPPTKGIANIAKRERNKGAKQLDALMKEISVPLRTYTENFPKRRDLHPYERSLIELT 180
SRNVPPTKGIANIAKRERNKGAKQLDALMKEISVPLRTYTENFPKRRDLHPYERSLIELT
Sbjct: 121 SRNVPPTKGIANIAKRERNKGAKQLDALMKEISVPLRTYTENFPKRRDLHPYERSLIELT 180
Query: 181 FGEGYYEKVIARVDALRKKINSVGKQHASVCAKSLTKREAEERLSEGRKKLEEAFEHGKW 240
FGEGYYEKVIARVDALRKKINSVGKQHASVCAKSLTKREAEERLSEGRKKLEEAFEHGKW
Sbjct: 181 FGEGYYEKVIARVDALRKKINSVGKQHASVCAKSLTKREAEERLSEGRKKLEEAFEHGKW 240
Query: 241 VIDDLVNIAKTLRSMPVVDPHIPTLCLVGSPNVGKSSLVRILSSGKPEVCSYPFTTRGIL 300
VIDDLVNIAKTLRSMPVVDPHIPTLCLVGSPNVGKSSLVRILSSGKPEVCSYPFTTRGIL
Sbjct: 241 VIDDLVNIAKTLRSMPVVDPHIPTLCLVGSPNVGKSSLVRILSSGKPEVCSYPFTTRGIL 300
Query: 301 MGHIVSNHERFQVTDTPGLLTRDDDERNNIEKLTLAVLSHLPIAVLYVHDLSEDCGTSVA 360
MGHIVSNHERFQVTDTPGLLTRDDDERNNIEKLTLAVLSHLPIAVLYVHDLSEDCGTSVA
Sbjct: 301 MGHIVSNHERFQVTDTPGLLTRDDDERNNIEKLTLAVLSHLPIAVLYVHDLSEDCGTSVA 360
Query: 361 DQYITYKHIKERFGDRLWLDVIXXXXXXXXXXXXEFDDADDEVGRYRRFGPECAIRVSVQ 420
DQYITYKHIKERFGDRLWLDVI EFDDADDEVGRYRRFGPECAIRVSVQ
Sbjct: 361 DQYITYKHIKERFGDRLWLDVISKSDLLDKKTSSEFDDADDEVGRYRRFGPECAIRVSVQ 420
Query: 421 GQVGVKELKEKVHQLLTSQMSRIKAGTIYQETQRTDDNAPGQT 463
GQVGVKELKEKVHQLLTSQMSRIKAGTIYQETQRTDDNAPGQT
Sbjct: 421 GQVGVKELKEKVHQLLTSQMSRIKAGTIYQETQRTDDNAPGQT 463
>AK108825
Length = 685
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 151/286 (52%), Gaps = 9/286 (3%)
Query: 101 FQRIPMVMPATDILMSAQRKSRNVPPT---KGIANIAKRERNKGAKQLDALMKEISVPLR 157
F+ + +V PA D + K++ PT G A +R R +++ + + L
Sbjct: 6 FKSMQVVPPAKDFIDIVLSKTQRQTPTVVHNGWA--IQRIRQFYMRKVKFTAQSWNEKLT 63
Query: 158 TYTENFPKRRDLHPYERSLIELTFGEGYYEKVIARVDALRKKINSVGKQHASVC--AKSL 215
++FPK D+HP+ L+ + + + +Y+ + +++ R ++ + + + + SL
Sbjct: 64 QILDDFPKVEDIHPFYSDLLNVLYDKDHYKLALGQLNTARNLVDRLAQDYVRLIKYGDSL 123
Query: 216 TKREAEERLSEGRKKLEEAFEHGKWVIDDLVNIAKTLRSMPVVDPHIPTLCLVGSPNVGK 275
+ + +R + GR + + + L + + + +P +DP+ +L L G PNVGK
Sbjct: 124 YRCKELKRAALGR--MCTLMKGQDASLKYLEQVRQHMSRLPGIDPNTRSLLLCGYPNVGK 181
Query: 276 SSLVRILSSGKPEVCSYPFTTRGILMGHIVSNHERFQVTDTPGLLTRDDDERNNIEKLTL 335
SS++ IL+ EV Y FTT+ + +GH+ + R+QV DTPG+L R +ERN IE ++
Sbjct: 182 SSMMNILTRADVEVQPYAFTTKSLYVGHMDYRYMRWQVLDTPGILDRPLEERNTIEMQSI 241
Query: 336 AVLSHLPIAVLYVHDLSEDCGTSVADQYITYKHIKERFGDRLWLDV 381
L+HL AVLY+ D+SE CG S+A Q + IK F ++ L V
Sbjct: 242 TALAHLRCAVLYLVDISEQCGYSLAQQAALFHSIKPLFANKPLLVV 287
>AK108927
Length = 647
Score = 131 bits (330), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 70/223 (31%), Positives = 128/223 (57%), Gaps = 14/223 (6%)
Query: 161 ENFPKRRDLHPYERSLIELTFGEGYYEKVIARVDALRKKINSVGKQHASVC--AKSLTKR 218
+ FPK D+HP+ L+ + + + +Y+ + +++ R +++VGK+++ + A SL +
Sbjct: 67 DEFPKLDDVHPFYADLMNILYDKNHYKLALGQINMARHLVDNVGKEYSRLLKFADSLYRC 126
Query: 219 EAEERLSEGR-----KKLEEAFEHGKWVIDDLVNIAKTLRSMPVVDPHIPTLCLVGSPNV 273
+ ++ + GR K+ ++ E+ L I + L +P +DP+ TL + G PNV
Sbjct: 127 KCLKKAALGRMCTIIKRQAQSLEY-------LEQIRQHLARLPSIDPNTRTLLICGFPNV 179
Query: 274 GKSSLVRILSSGKPEVCSYPFTTRGILMGHIVSNHERFQVTDTPGLLTRDDDERNNIEKL 333
GKSS + +++ EV Y FTT+ + +GH + R+QV DTPG+L +ERN IE
Sbjct: 180 GKSSFLNKVTNADVEVQPYAFTTKSLYVGHTDYKYLRWQVVDTPGILDHALEERNTIEMQ 239
Query: 334 TLAVLSHLPIAVLYVHDLSEDCGTSVADQYITYKHIKERFGDR 376
+ ++HL ++LY+ D+SE CG S+ +Q + +IK F ++
Sbjct: 240 AITAMAHLRASILYIMDVSEQCGYSLEEQVSLFNNIKALFANK 282
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,350,061
Number of extensions: 558354
Number of successful extensions: 1579
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1576
Number of HSP's successfully gapped: 3
Length of query: 463
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 359
Effective length of database: 11,605,545
Effective search space: 4166390655
Effective search space used: 4166390655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)