Os08g0158900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GTP1/OBG domain containing protein.
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Os08g0158900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GTP1/OBG domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 174.89 | 0.621 | 3.31 | -0.068 | 0.255 | -1.9 | 0.106 | 3.16 | 0.131 | 18.9 | 29.8 | 303 | -- | -- |
| 172.74 | 0.612 | 3.29 | 0.236 | 0.166 | -1.52 | 0.0587 | -- | 0.0597 | 19.6 | 29.3 | 330 | -- | -- |
| 174.07 | 0.614 | 3.3 | -0.0302 | 0.242 | -1.82 | -- | 2.58 | 0.13 | 19.4 | 29.62 | 302 | -- | -- |
| 172.66 | 0.612 | 3.3 | 0.223 | 0.165 | -1.55 | -- | -- | 0.0505 | 20.6 | 29.36 | 329 | -- | -- |
| 175 | 0.616 | 3.31 | -0.0259 | -- | -1.89 | -- | 2.03 | 0.0615 | -- | 29.6 | 322 | -- | -- |
| 230.89 | 0.712 | 3.29 | 0.476 | 0.853 | -- | 0.874 | -- | 0.126 | 17.7 | -- | -- | -- | -- |
| 232.75 | 0.714 | 3.29 | 0.471 | 0.858 | -- | -- | -- | 0.13 | 17.7 | -- | -- | -- | -- |
| 173.92 | 0.614 | 3.29 | 0.212 | -- | -1.62 | -- | -- | 0.0468 | -- | 29.34 | 339 | -- | -- |
| 173.94 | 0.614 | 3.3 | -- | 0.154 | -1.59 | -- | -- | 0.025 | 20.9 | 29.36 | 329 | -- | -- |
| 270.98 | 0.769 | 3.28 | 0.444 | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
| 238.61 | 0.723 | 3.3 | -- | 0.851 | -- | -- | -- | 0.0771 | 17.7 | -- | -- | -- | -- |
| 175.1 | 0.616 | 3.3 | -- | -- | -1.65 | -- | -- | 0.0229 | -- | 29.31 | 339 | -- | -- |
| 276.18 | 0.776 | 3.29 | -- | -- | -- | -- | -- | 0.0598 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 177.18 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 15 |
| 4 | 177.22 | temperature | 25 | 270 | > th | dose dependent | sin | 23 | NA |
| 29 | 177.87 | temperature | 30 | 270 | > th | dose independent | rect. | 9 | 9 |
| 33 | 177.89 | temperature | 30 | 270 | < th | dose independent | sin | 23 | NA |
| 62 | 178.12 | temperature | 30 | 270 | > th | dose independent | sin | 23 | NA |
| 64 | 178.13 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 72 | 178.18 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 74 | 178.19 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 109 | 178.65 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 116 | 178.70 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 23 |
| 156 | 179.17 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 158 | 179.22 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 281 | 179.76 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 283 | 179.78 | temperature | 25 | 90 | > th | dose dependent | sin | 19 | NA |
| 293 | 180.12 | temperature | 30 | 270 | < th | dose independent | rect. | 20 | 23 |
| 310 | 180.23 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 23 |
| 320 | 180.66 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 23 |
| 332 | 181.14 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 23 |
| 333 | 181.15 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 335 | 181.20 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 12 |
| 340 | 181.29 | temperature | 30 | 270 | > th | dose independent | rect. | 13 | 23 |
| 353 | 181.64 | temperature | 25 | 720 | > th | dose dependent | rect. | 5 | 9 |
| 360 | 181.73 | temperature | 25 | 720 | > th | dose dependent | sin | 6 | NA |
| 421 | 182.77 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 452 | 183.27 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 23 |
| 457 | 183.31 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 7 |
| 468 | 183.45 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 14 |
| 469 | 183.46 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 536 | 184.09 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 23 |
| 602 | 184.84 | temperature | 30 | 720 | < th | dose independent | rect. | 18 | 18 |
| 603 | 184.88 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 19 |
| 612 | 185.01 | temperature | 30 | 720 | < th | dose independent | sin | 8 | NA |
| 644 | 185.50 | temperature | 30 | 720 | > th | dose independent | sin | 8 | NA |
| 662 | 185.55 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 5 |