BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0158600 Os08g0158600|AK072477
         (119 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0158600  Similar to Cell wall invertase (EC 3.2.1.26)        123   3e-29

>Os08g0158600 Similar to Cell wall invertase (EC 3.2.1.26)
          Length = 119

 Score =  123 bits (308), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 72/96 (75%), Positives = 72/96 (75%)

Query: 24  CHAVPQSLEAEQASDSHFQPPMMNWINGMVGLCIXXXXXXXXXELSREQACLGLLLCLAF 83
           CHAVPQSLEAEQASDSHFQPPMMNWINGMVGLCI         ELSREQACLGLLLCLAF
Sbjct: 24  CHAVPQSLEAEQASDSHFQPPMMNWINGMVGLCIASAAVAVAAELSREQACLGLLLCLAF 83

Query: 84  HXXXXXXXXXXXXXXXGRSLARTQSRRNRNLLYSYY 119
           H               GRSLARTQSRRNRNLLYSYY
Sbjct: 84  HAGIALVIRAAAAPDAGRSLARTQSRRNRNLLYSYY 119



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.135    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,279,979
Number of extensions: 50383
Number of successful extensions: 83
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 34
Effective length of database: 12,597,611
Effective search space: 428318774
Effective search space used: 428318774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)