BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0145600 Os08g0145600|AK058685
         (103 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0145600  Conserved hypothetical protein                      210   2e-55
Os08g0412000                                                       94   2e-20

>Os08g0145600 Conserved hypothetical protein
          Length = 103

 Score =  210 bits (534), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   MGVSPRPVRARWPLSRLEMAWVDRGTGHGVANRGQGRDGREDVVLQSNHYAGHHAVINSA 60
           MGVSPRPVRARWPLSRLEMAWVDRGTGHGVANRGQGRDGREDVVLQSNHYAGHHAVINSA
Sbjct: 1   MGVSPRPVRARWPLSRLEMAWVDRGTGHGVANRGQGRDGREDVVLQSNHYAGHHAVINSA 60

Query: 61  PSQPGVDAPPLPSPSVEVHNLVDSFRENITFPVQFSDASKWVD 103
           PSQPGVDAPPLPSPSVEVHNLVDSFRENITFPVQFSDASKWVD
Sbjct: 61  PSQPGVDAPPLPSPSVEVHNLVDSFRENITFPVQFSDASKWVD 103



>Os08g0412000 
          Length = 148

 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/64 (76%), Positives = 50/64 (78%), Gaps = 7/64 (10%)

Query: 19 MAWVDRGTGHGV-------ANRGQGRDGREDVVLQSNHYAGHHAVINSAPSQPGVDAPPL 71
          MA V+ G G G         NRGQGRDGR DVVLQSNHYAGHHAVINSAPSQPGVDAPPL
Sbjct: 1  MAAVEVGNGVGRQGHRARRCNRGQGRDGRADVVLQSNHYAGHHAVINSAPSQPGVDAPPL 60

Query: 72 PSPS 75
          PSPS
Sbjct: 61 PSPS 64



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.134    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,635,994
Number of extensions: 218816
Number of successful extensions: 955
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 955
Number of HSP's successfully gapped: 2
Length of query: 103
Length of database: 17,035,801
Length adjustment: 71
Effective length of query: 32
Effective length of database: 13,328,607
Effective search space: 426515424
Effective search space used: 426515424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)