BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0137100 Os08g0137100|AK111761
(376 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0137100 Similar to Fertilization-independent endosperm... 781 0.0
AK110077 69 5e-12
>Os08g0137100 Similar to Fertilization-independent endosperm protein 2 (Fragment)
Length = 376
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/376 (100%), Positives = 376/376 (100%)
Query: 1 MAKLGPGQGLGCEAAVGLLAPSRKREYKACNKLTEGKRPLYAIGFNFLDFHYYEVFATVG 60
MAKLGPGQGLGCEAAVGLLAPSRKREYKACNKLTEGKRPLYAIGFNFLDFHYYEVFATVG
Sbjct: 1 MAKLGPGQGLGCEAAVGLLAPSRKREYKACNKLTEGKRPLYAIGFNFLDFHYYEVFATVG 60
Query: 61 GNRVTTYSCLKDGNFAILQAYIDEDKDESFYTLSWACDLDGTPLLVAAGSNGIIRVINCA 120
GNRVTTYSCLKDGNFAILQAYIDEDKDESFYTLSWACDLDGTPLLVAAGSNGIIRVINCA
Sbjct: 61 GNRVTTYSCLKDGNFAILQAYIDEDKDESFYTLSWACDLDGTPLLVAAGSNGIIRVINCA 120
Query: 121 TEKLLKTFVGHGDSINEIRTQALKPSLIISASKDESVRLWNVHTGICILIFAGAGGHRNE 180
TEKLLKTFVGHGDSINEIRTQALKPSLIISASKDESVRLWNVHTGICILIFAGAGGHRNE
Sbjct: 121 TEKLLKTFVGHGDSINEIRTQALKPSLIISASKDESVRLWNVHTGICILIFAGAGGHRNE 180
Query: 181 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWPYVEQSFTWTDLPSKFPTKYVQFPVLVA 240
VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWPYVEQSFTWTDLPSKFPTKYVQFPVLVA
Sbjct: 181 VLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWPYVEQSFTWTDLPSKFPTKYVQFPVLVA 240
Query: 241 VVHSNYVDCTRWLGDFILSKSVDNEIVLWEPKTKEQSPGEGSIDILQKYPVPECDIWFIK 300
VVHSNYVDCTRWLGDFILSKSVDNEIVLWEPKTKEQSPGEGSIDILQKYPVPECDIWFIK
Sbjct: 241 VVHSNYVDCTRWLGDFILSKSVDNEIVLWEPKTKEQSPGEGSIDILQKYPVPECDIWFIK 300
Query: 301 FSCDFHFNQLAIGNREGKVFVWEVQSSPPVLTARLTNPQCKSAIRQTAVSFDGSTILACS 360
FSCDFHFNQLAIGNREGKVFVWEVQSSPPVLTARLTNPQCKSAIRQTAVSFDGSTILACS
Sbjct: 301 FSCDFHFNQLAIGNREGKVFVWEVQSSPPVLTARLTNPQCKSAIRQTAVSFDGSTILACS 360
Query: 361 EDGSIWRWDEVDHPKA 376
EDGSIWRWDEVDHPKA
Sbjct: 361 EDGSIWRWDEVDHPKA 376
>AK110077
Length = 1242
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 103 PLLVAAGSNGIIRVINCATEKLLKTFVGHGDSINEIRTQALKPSLIISASKDESVRLWNV 162
PLLV+ G + I+V N T K L T GH D + + P I+SAS D+++R+WN
Sbjct: 66 PLLVSGGDDYKIKVWNHKTRKCLFTLNGHLDYVRTVFFHHEHP-WILSASDDQTIRIWNW 124
Query: 163 HTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSM 208
+ CI I GH + V+ FHP D I S MD TV++W +
Sbjct: 125 QSRTCIAILT---GHNHYVMCAQFHPKDDL-IVSASMDQTVRVWDI 166
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.137 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,341,957
Number of extensions: 602728
Number of successful extensions: 1675
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1703
Number of HSP's successfully gapped: 2
Length of query: 376
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 274
Effective length of database: 11,709,973
Effective search space: 3208532602
Effective search space used: 3208532602
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)