Os08g0137100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Fertilization-independent endosperm protein 2 (Fragment).
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Os08g0137100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Fertilization-independent endosperm protein 2 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.5 | 0.179 | 11.8 | -0.272 | 0.238 | -0.114 | -0.65 | -1.18 | 0.125 | 15.7 | 74 | 2184 | -- | -- |
| 15.93 | 0.186 | 11.8 | -0.337 | 0.179 | -0.324 | -0.664 | -- | 0.0567 | 15.3 | 75.16 | 3558 | -- | -- |
| 15.34 | 0.182 | 11.8 | -0.27 | 0.263 | -0.131 | -- | -1.19 | 0.117 | 15.8 | 76.98 | 2515 | -- | -- |
| 16.53 | 0.189 | 11.8 | -0.388 | 0.244 | -0.287 | -- | -- | 0.0426 | 15.6 | 75 | 3730 | -- | -- |
| 18.46 | 0.2 | 11.8 | -0.383 | -- | -0.282 | -- | -0.522 | 0.0918 | -- | 76.44 | 1880 | -- | -- |
| 17 | 0.193 | 11.8 | -0.394 | 0.243 | -- | -0.578 | -- | 0.107 | 15.6 | -- | -- | -- | -- |
| 17.94 | 0.198 | 11.8 | -0.403 | 0.247 | -- | -- | -- | 0.104 | 16.2 | -- | -- | -- | -- |
| 18.8 | 0.203 | 11.8 | -0.426 | -- | -0.151 | -- | -- | 0.0929 | -- | 74 | 3214 | -- | -- |
| 19.91 | 0.208 | 11.8 | -- | 0.253 | -0.416 | -- | -- | 0.119 | 16.2 | 73 | 47520 | -- | -- |
| 21.23 | 0.215 | 11.8 | -0.413 | -- | -- | -- | -- | 0.0973 | -- | -- | -- | -- | -- |
| 22.23 | 0.221 | 11.8 | -- | 0.254 | -- | -- | -- | 0.149 | 16.2 | -- | -- | -- | -- |
| 23.16 | 0.225 | 11.8 | -- | -- | -0.161 | -- | -- | 0.146 | -- | 72.94 | 47520 | -- | -- |
| 25.74 | 0.237 | 11.8 | -- | -- | -- | -- | -- | 0.143 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 3 | 14.05 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 13 |
| 22 | 14.30 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 3 |
| 27 | 14.34 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 6 |
| 28 | 14.34 | temperature | 25 | 90 | > th | dose independent | rect. | 9 | 13 |
| 54 | 14.45 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 63 | 14.46 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 17 |
| 98 | 14.52 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 8 |
| 104 | 14.53 | humidity | 80 | 4320 | < th | dose dependent | rect. | 18 | 9 |
| 132 | 14.55 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 19 |
| 140 | 14.56 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 147 | 14.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 154 | 14.58 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 14 |
| 155 | 14.58 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 166 | 14.59 | temperature | 20 | 720 | > th | dose dependent | sin | 3 | NA |
| 178 | 14.59 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 184 | 14.60 | humidity | 50 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 188 | 14.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 14 |
| 194 | 14.61 | humidity | 90 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 195 | 14.61 | humidity | 80 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 230 | 14.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 236 | 14.64 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 252 | 14.65 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 301 | 14.68 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 305 | 14.68 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 345 | 14.70 | temperature | 20 | 270 | > th | dose dependent | sin | 0 | NA |
| 385 | 14.72 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 394 | 14.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 18 |
| 404 | 14.73 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 406 | 14.73 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 418 | 14.74 | humidity | 80 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 420 | 14.74 | temperature | 25 | 720 | > th | dose dependent | sin | 7 | NA |
| 421 | 14.74 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 492 | 14.76 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 4 |
| 533 | 14.77 | temperature | 20 | 90 | > th | dose dependent | sin | 21 | NA |
| 534 | 14.77 | temperature | 10 | 270 | > th | dose dependent | sin | 0 | NA |
| 589 | 14.78 | radiation | 10 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 645 | 14.80 | humidity | 80 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 647 | 14.80 | temperature | 10 | 90 | > th | dose dependent | sin | 22 | NA |
| 715 | 14.82 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 737 | 14.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 12 |
| 756 | 14.83 | temperature | 10 | 10 | > th | dose dependent | sin | 21 | NA |
| 783 | 14.83 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 784 | 14.83 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 800 | 14.84 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 803 | 14.84 | humidity | 80 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 847 | 14.85 | temperature | 25 | 270 | > th | dose independent | sin | 23 | NA |
| 848 | 14.85 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 849 | 14.85 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 852 | 14.85 | radiation | 10 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 905 | 14.86 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 927 | 14.86 | humidity | 90 | 1440 | < th | dose dependent | rect. | 16 | 19 |
| 944 | 14.87 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 996 | 14.88 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |